Name:           bout++

Version:        4.3.0

Release:        2%{?dist}

Summary:        Library for the BOUndary Turbulence simulation framework

# BOUT++ itself is LGPL, but we are linking with GPLed code, so the distributed library is GPL

License:        GPLv3+

URL:            https://boutproject.github.io/

Source0:        https://github.com/boutproject/BOUT-dev/releases/download/v%{version}/BOUT++-v%{version}.tar.gz

# Do not install mpark

Patch0:  remove-mpark.patch

# PR 1851

Patch1:  test-mpi.patch

# PR 1853

Patch2:  test-metric-precision.patch

# PR 1855

Patch3:  arm-deref.patch

# PR 1856

Patch4:  parallel-race.patch

# install make.config to header

Patch5:  bout-conf.patch

# PR 1871

Patch6:  typo-released.patch

# Disable tests and manual on epel < 8

%if 0%{?rhel} && 0%{?rhel} < 8

%bcond_with manual

%bcond_with test

%else

%bcond_without manual

%bcond_without test

%endif

%if 0%{?rhel} && 0%{?rhel} <= 6

%ifarch ppc64

# No mpich on ppc64 in EL6

%bcond_with mpich

%else

%bcond_without mpich

%endif

%else

%bcond_without mpich

%endif

%ifarch s390 s390x

# No openmpi on s390(x)

%bcond_with openmpi

%else

%bcond_without openmpi

%endif

# Enable weak dependencies

%if 0%{?fedora} || ( 0%{?rhel} && 0%{?rhel} > 7 )

%bcond_without recommend

%else

%bcond_with recommend

%endif

%if 0%{?fedora} || ( 0%{?rhel} && 0%{?rhel} > 7 )

# Use system mpark

%bcond_without system_mpark

%else

%bcond_with system_mpark

%endif

#

#           DEPENDENCIES

#

BuildRequires:  m4

BuildRequires:  zlib-devel

BuildRequires:  autoconf

BuildRequires:  autoconf-archive

BuildRequires:  gettext-devel

BuildRequires:  automake

BuildRequires:  environment-modules

BuildRequires:  netcdf-devel

BuildRequires:  netcdf-cxx%{?fedora:4}-devel

BuildRequires:  hdf5-devel

BuildRequires:  fftw-devel

BuildRequires:  make

BuildRequires:  python%{python3_pkgversion}

BuildRequires:  python%{python3_pkgversion}-numpy

BuildRequires:  python%{python3_pkgversion}-Cython

BuildRequires:  python%{python3_pkgversion}-netcdf4

BuildRequires:  python%{python3_pkgversion}-scipy

BuildRequires:  blas-devel

BuildRequires:  lapack-devel

BuildRequires:  gcc-c++

%if %{with system_mpark}

BuildRequires:  mpark-variant-devel

%endif

# cxx generation

BuildRequires:  python%{python3_pkgversion}-jinja2

# Documentation

%if %{with manual}

BuildRequires:  doxygen

BuildRequires:  python3-sphinx

%endif

#

#           DESCRIPTIONS

#

%if %{with mpich}

BuildRequires:  mpich-devel

%global mpi_list mpich

%endif

%if %{with openmpi}

BuildRequires:  openmpi-devel

%global mpi_list %{?mpi_list} openmpi

%endif

%description

BOUT++ is a framework for writing fluid and plasma simulations in

curvilinear geometry. It is intended to be quite modular, with a

variety of numerical methods and time-integration solvers available.

BOUT++ is primarily designed and tested with reduced plasma fluid

models in mind, but it can evolve any number of equations, with

equations appearing in a readable form.

%if %{with mpich}

%package mpich

Summary: BOUT++ mpich libraries

Requires: %{name}-common = %{version}-%{release}

# Use bundled version, to reproduce upstream results

Provides: bundled(libpvode)

%if %{with recommend}

Recommends: environment-modules

%endif

%package mpich-devel

Summary: BOUT++ mpich libraries

Requires: mpich-devel

Requires: netcdf-cxx%{?fedora:4}-devel

Requires: hdf5-devel

Requires: fftw-devel

Requires: %{name}-mpich = %{version}-%{release}

Requires: make

%description mpich-devel

BOUT++ is a framework for writing fluid and plasma simulations in

curvilinear geometry. It is intended to be quite modular, with a

variety of numerical methods and time-integration solvers available.

BOUT++ is primarily designed and tested with reduced plasma fluid

models in mind, but it can evolve any number of equations, with

equations appearing in a readable form.

This BOUT++ library is build for mpich.

%description mpich

BOUT++ is a framework for writing fluid and plasma simulations in

curvilinear geometry. It is intended to be quite modular, with a

variety of numerical methods and time-integration solvers available.

BOUT++ is primarily designed and tested with reduced plasma fluid

models in mind, but it can evolve any number of equations, with

equations appearing in a readable form.

This BOUT++ library is build for mpich.

%package -n python%{python3_pkgversion}-%{name}-mpich

Summary:  BOUT++ mpich library for python%{python3_pkgversion}

Requires: %{name}-mpich

Requires: python%{python3_pkgversion}-%{name}

BuildRequires: python%{python3_pkgversion}-devel

Requires: mpich

Requires: python%{python3_pkgversion}-mpich

Requires: python%{python3_pkgversion}-numpy

%{?python_provide:%python_provide python%{python3_pkgversion}-%{name}-mpich}

%description  -n python%{python3_pkgversion}-%{name}-mpich

This is the BOUT++ library python%{python3_pkgversion} with mpich.

%endif

%if %{with openmpi}

%package openmpi

Summary: BOUT++ openmpi libraries

# Use bundled version, to reproduce upstream results

Provides: bundled(libpvode)

Requires: %{name}-common = %{version}-%{release}

%if %{with recommend}

Recommends: environment-modules

%endif

%package openmpi-devel

Summary: BOUT++ openmpi libraries

Requires: openmpi-devel

Requires: netcdf-cxx%{?fedora:4}-devel

Requires: hdf5-devel

Requires: fftw-devel

Requires: make

Requires: %{name}-openmpi = %{version}-%{release}

%description openmpi-devel

BOUT++ is a framework for writing fluid and plasma simulations in

curvilinear geometry. It is intended to be quite modular, with a

variety of numerical methods and time-integration solvers available.

BOUT++ is primarily designed and tested with reduced plasma fluid

models in mind, but it can evolve any number of equations, with

equations appearing in a readable form.

This BOUT++ library is build for openmpi and provides the required

header files.

%description openmpi

BOUT++ is a framework for writing fluid and plasma simulations in

curvilinear geometry. It is intended to be quite modular, with a

variety of numerical methods and time-integration solvers available.

BOUT++ is primarily designed and tested with reduced plasma fluid

models in mind, but it can evolve any number of equations, with

equations appearing in a readable form.

This BOUT++ library is build for openmpi.

%package -n python%{python3_pkgversion}-%{name}-openmpi

Summary:  BOUT++ openmpi library for python%{python3_pkgversion}

Requires: %{name}-openmpi

Requires: python%{python3_pkgversion}-%{name}

BuildRequires: python%{python3_pkgversion}-devel

Requires: openmpi

Requires: python%{python3_pkgversion}-openmpi

Requires: python%{python3_pkgversion}-numpy

%{?python_provide:%python_provide python%{python3_pkgversion}-%{name}-openmpi}

%description  -n python%{python3_pkgversion}-%{name}-openmpi

This is the BOUT++ library python%{python3_pkgversion} with openmpi.

%endif

%package common

Summary: Common files for BOUT++

%description common

MPI-independent files for BOUT++, namely localisation files.

%package -n python%{python3_pkgversion}-%{name}

Summary: BOUT++ python library

Requires: netcdf4-python%{python3_pkgversion}

Requires: python%{python3_pkgversion}-numpy

%if %{with recommend}

Recommends: python%{python3_pkgversion}-scipy

Recommends: python%{python3_pkgversion}-matplotlib

%endif

BuildArch: noarch

%{?python_provide:%python_provide python%{python3_pkgversion}-%{name}}

%description -n python%{python3_pkgversion}-%{name}

Python%{python3_pkgversion} library for pre and post processing of BOUT++ data

%if %{with manual}

%package -n %{name}-doc

Summary: BOUT++ Documentation

BuildArch: noarch

%description -n %{name}-doc

BOUT++ is a framework for writing fluid and plasma simulations in

curvilinear geometry. It is intended to be quite modular, with a

variety of numerical methods and time-integration solvers available.

BOUT++ is primarily designed and tested with reduced plasma fluid

models in mind, but it can evolve any number of equations, with

equations appearing in a readable form.

This package contains the documentation.

%endif

#

#           PREP

#

%prep

%setup -q -n BOUT++-v%{version}

%if %{with system_mpark}

# use mpark provided by fedora

rm -rf externalpackages/mpark.variant/

mkdir -p externalpackages/mpark.variant/include/

%patch0 -p 1

%endif

%patch1 -p 1

%patch2 -p 1

%patch3 -p 1

%patch4 -p 1

%patch5 -p 1

%patch6 -p 1

# Remove shebang

for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build )

do

    sed -i '/^#!\//d' $f

done

autoreconf

#

#           BUILD

#

%build

%global configure_opts \\\

           --with-netcdf \\\

           --with-hdf5 \\\

           --enable-shared

%{nil}

# MPI builds

export CC=mpicc

export CXX=mpicxx

for mpi in %{mpi_list}

do

  mkdir build_$mpi

  cp -al [^b]* build-aux bin build_$mpi

done

for mpi in %{mpi_list}

do

  pushd build_$mpi

  if [ $mpi = mpich ] ; then

      %_mpich_load

  elif [ $mpi = openmpi ] ; then

      %_openmpi_load

  else

      echo "unknown mpi" &> /dev/stderr

      exit 1

  fi

  %configure %{configure_opts} \

    --libdir=%{_libdir}/$mpi/lib \

    --bindir=%{_libdir}/$mpi/bin \

    --sbindir=%{_libdir}/$mpi/sbin \

    --includedir=%{_includedir}/$mpi-%{_arch} \

    --datarootdir=%{_datadir}

  make %{?_smp_mflags} shared python

  export LD_LIBRARY_PATH=$(pwd)/lib

  %if %{with manual}

  make %{?_smp_mflags} -C manual html

  %endif

  if [ $mpi = mpich ] ; then

      %_mpich_unload

  elif [ $mpi = openmpi ] ; then

      %_openmpi_unload

  fi

  popd

done

#

#           INSTALL

#

%install

for mpi in %{mpi_list}

do

  pushd build_$mpi

  if [ $mpi = mpich ] ; then

      %_mpich_load

  else

      %_openmpi_load

  fi

  make install DESTDIR=${RPM_BUILD_ROOT}

  # mark this as a released version, to disable compiling the library

  sed -i '26 i RELEASED                 = %{version}-%{release}' ${RPM_BUILD_ROOT}/%{_includedir}/${mpi}-%{_arch}/bout++/make.config

  rm -rf  ${RPM_BUILD_ROOT}/usr/share/bout++

  rm -f ${RPM_BUILD_ROOT}/%{_libdir}/${mpi}/lib/*.a

  install lib/*.so.* ${RPM_BUILD_ROOT}/%{_libdir}/${mpi}/lib/

  pushd ${RPM_BUILD_ROOT}/%{_libdir}/${mpi}/lib/

  for f in *.so.*

  do

      ln -s $f ${f%%.so*}.so

  done

  popd

  popd

  if [ $mpi = mpich ] ; then

      %_mpich_unload

  else

      %_openmpi_unload

  fi

done

# install python libraries

pushd tools/pylib

for d in boutdata bout_runners boututils  post_bout zoidberg

do

    mkdir -p ${RPM_BUILD_ROOT}/%{python3_sitelib}/$d

    cp $d/*py ${RPM_BUILD_ROOT}/%{python3_sitelib}/$d/

done

popd

# install manual

%if %{with manual}

mandir=$(ls build_*/manual -d|head -n1)

mkdir -p ${RPM_BUILD_ROOT}/%{_defaultdocdir}/bout++/

rm -rf $mandir/html/.buildinfo

rm -rf $mandir/html/.doctrees

rm -rf $mandir/html/_sources

cp -r $mandir/html ${RPM_BUILD_ROOT}/%{_defaultdocdir}/bout++/

%endif

# install boutcore library

for mpi in %{mpi_list}

do

    mkdir -p ${RPM_BUILD_ROOT}/%{python3_sitearch}/${mpi}/

    install build_$mpi/tools/pylib/boutcore.*.so ${RPM_BUILD_ROOT}/%{python3_sitearch}/${mpi}/

done

%find_lang libbout

#

#           CHECK

#

%check

%if %{with test}

for mpi in %{mpi_list}

do

    if [ $mpi = mpich ] ; then

        %_mpich_load

    else

        %_openmpi_load

    fi

    export OMPI_MCA_rmaps_base_oversubscribe=yes

    pushd build_$mpi

    make %{?_smp_mflags} build-check

    make check

    popd

    if [ $mpi = mpich ] ; then

        %_mpich_unload

    else

        %_openmpi_unload

    fi

done

%endif

#

#           FILES SECTION

#

%if %{with mpich}

%files mpich

%{_libdir}/mpich/lib/libbout++.so.4.3.0

%{_libdir}/mpich/lib/*.so.1.0.0

%{_libdir}/mpich/bin/*

%doc README.md

%doc CITATION.bib

%doc CITATION.cff

%doc CHANGELOG.md

%doc CONTRIBUTING.md

%license LICENSE

%license LICENSE.GPL

%files mpich-devel

%{_includedir}/mpich-%{_arch}/bout++

%{_libdir}/mpich/lib/*.so

%files -n python%{python3_pkgversion}-%{name}-mpich

%{python3_sitearch}/mpich/*

%endif

%if %{with openmpi}

%files openmpi

%{_libdir}/openmpi/lib/libbout++.so.4.3.0

%{_libdir}/openmpi/lib/*.so.1.0.0

%{_libdir}/openmpi/bin/*

%doc README.md

%doc CITATION.bib

%doc CITATION.cff

%doc CHANGELOG.md

%doc CONTRIBUTING.md

%license LICENSE

%license LICENSE.GPL

%files openmpi-devel

%{_includedir}/openmpi-%{_arch}/bout++

%{_libdir}/openmpi/lib/*.so

%files -n python%{python3_pkgversion}-%{name}-openmpi

%{python3_sitearch}/openmpi/*

%endif

%files common -f libbout.lang

%files -n python%{python3_pkgversion}-%{name}

%{python3_sitelib}/*bout*

%{python3_sitelib}/zoidberg

%doc README.md

%doc CITATION.bib

%doc CITATION.cff

%doc CHANGELOG.md

%doc CONTRIBUTING.md

%license LICENSE

%license LICENSE.GPL

%if %{with manual}

%files -n %{name}-doc

%doc  %{_defaultdocdir}/bout++/

%endif

#

#           CHANGELOG

#

%changelog

* Wed Dec 11 2019 David Schwörer <schword2mail.dcu.ie> - 4.3.0-2

- update make.config during install

* Thu Dec 05 2019 David Schwörer <schword2mail.dcu.ie> - 4.3.0-1

- update to 4.3.0

- add common subpackage for lang files

* Fri Aug 23 2019 David Schwörer <schword2mail.dcu.ie> - 4.2.2-1

- Remove ldconfig scriptlets

- Use mpi scriplets

- Ensure sitelib packages do not match arched mpi packages

- Move commons package to the base packages

- Specify so version

- Drop man page for library

* Fri Mar 01 2019 David Schwörer <schword2mail.dcu.ie> - 4.2.2-0

- Update to version 4.2.2

* Thu Feb 07 2019 David Schwörer <schword2mail.dcu.ie> - 4.2.1-0

- Fix license

- Bump to 4.2.1

- Use new release

- Release contains gtest, so we can run make check

* Tue Dec 04 2018 David Schwörer <schword2mail.dcu.ie> - 4.2.0-3

- Fix recommend

* Thu Oct 18 2018 David Schwörer <schword2mail.dcu.ie> - 4.2.0-2

- Update to 4.2.0

- Remove python2 support

- Add boutcore support

- Fix mangling of shebangs

* Tue Dec 12 2017 David Schwörer <schword2mail.dcu.ie> - 4.1.2-2

- Add missing python_provide macro

* Fri Dec 01 2017 David Schwörer <schword2mail.dcu.ie> - 4.1.2-1

- Update to new release, remove patch

* Tue May 02 2017 David Schwörer <schword2mail.dcu.ie> - 4.1.1-1

- Initial RPM release.