From bbebbcf6bdd1e81d2689e1a01dac21c2f6ba1d50 Mon Sep 17 00:00:00 2001
From: Adam Huffman <verdurin@fedoraproject.org>
Date: Jun 07 2014 09:33:04 +0000
Subject: Update to upstream 2.20.1 and build integrated docs


---

diff --git a/.gitignore b/.gitignore
index 3ee93bf..67c2610 100644
--- a/.gitignore
+++ b/.gitignore
@@ -11,3 +11,4 @@
 /bedtools-2.19.0.tar.gz
 /bedtools-2.19.1.tar.gz
 /bedtools-gzstream-path.patch
+/bedtools-2.20.1.tar.gz
diff --git a/BEDTools.spec b/BEDTools.spec
index c8952c6..d487a96 100644
--- a/BEDTools.spec
+++ b/BEDTools.spec
@@ -15,6 +15,7 @@ BuildRoot:	%{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 
 BuildRequires:	  zlib-devel
 BuildRequires:	  python
+BuildRequires:	  python-sphinx
 
 %description
 
@@ -25,14 +26,14 @@ SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
 answer complicated research questions by "streaming" several BEDTools
 together. 
 
-%package  docs
-Summary:  Manual for BEDTools
-Group:	  Documentation
-License:  GPLv2
+#%package  docs
+#Summary:  Manual for BEDTools
+#Group:	  Documentation
+#License:  GPLv2
 
-%description docs
+#%description docs
 
-PDF manual for the BEDTools utilities.
+#PDF manual for the BEDTools utilities.
 
 
 %prep
@@ -50,6 +51,11 @@ cp -p %{SOURCE1} .
 make %{?_smp_mflags} CXXFLAGS="-I. %{optflags}"
 #make %{?_smp_mflags} CXXFLAGS="%{optflags}"
 
+cd docs
+./build.sh
+
+cd ..
+
 
 %install
 rm -rf %{buildroot}
@@ -119,9 +125,9 @@ rm -rf %{buildroot}
 %{_datadir}/%{name}/genomes
 %{_datadir}/%{name}/data
 
-%files docs
-%defattr(-,root,root,-)
-%doc %{name}-User-Manual.v4.pdf
+#%files docs
+#%defattr(-,root,root,-)
+#%doc %{name}-User-Manual.v4.pdf
 
 %changelog
 * Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.19.1-3
diff --git a/sources b/sources
index 8d7a509..aa65daf 100644
--- a/sources
+++ b/sources
@@ -1,3 +1 @@
-58de5377c3fb1bc1ab5a2620cf48f846  bedtools-2.19.1.tar.gz
-597fb82c8790fa47c18cd6bf8df25ac2  BEDTools-User-Manual.v4.pdf
-d03e017a642e837a6f431aa4503f02f7  bedtools-gzstream-path.patch
+2f6858d975b08c17e771845166f2eed9  bedtools-2.20.1.tar.gz