diff -up BiocParallel/BiocParallel/configure.ac.lrt BiocParallel/BiocParallel/configure.ac --- BiocParallel/BiocParallel/configure.ac.lrt 2019-02-07 11:23:03.212701085 -0500 +++ BiocParallel/BiocParallel/configure.ac 2019-02-07 11:23:03.212701085 -0500 @@ -0,0 +1,8 @@ +AC_INIT([BiocParallel], 1.16.5) dnl package name, version + +dnl check librt for shm_open support +dnl R usually is linked to librt but not always +AC_CHECK_LIB(rt, shm_open) +AC_SUBST(LIBS) +AC_CONFIG_FILES([src/Makevars]) +AC_OUTPUT diff -up BiocParallel/BiocParallel/src/Makevars.in.lrt BiocParallel/BiocParallel/src/Makevars.in --- BiocParallel/BiocParallel/src/Makevars.in.lrt 2019-02-07 11:23:29.036215789 -0500 +++ BiocParallel/BiocParallel/src/Makevars.in 2019-02-07 11:23:39.532018543 -0500 @@ -0,0 +1 @@ +PKG_LIBS = @LIBS@