%global packname msm %global __suggests_exclude ^R\\((flexsurv|minqa|mstate|numDeriv)\\) Name: R-%{packname} Version: 1.6.9 Release: 3%{?dist} Source0: ftp://cran.r-project.org/pub/R/contrib/main/%{packname}_%{version}.tar.gz License: GPLv2+ and GPLv3+ URL: http://cran.r-project.org/web/packages/msm/ Summary: Multi-state Markov and hidden Markov models in continuous time BuildRequires: R-devel >= 3.4.0, tetex-latex, R-mvtnorm-devel, R-survival, R-expm %description Functions for fitting general continuous-time Markov and hidden Markov multi-state models to longitudinal data. Both Markov transition rates and the hidden Markov output process can be modeled in terms of covariates. A variety of observation schemes are supported, including processes observed at arbitrary times, completely-observed processes, and censored states. %prep %setup -q -c -n %{packname} # Fix some permissions and formats # find . -type f -perm 755 -exec chmod 644 {} \; find . -type f -name '*.[hc]' -exec chmod 644 {} \; # Fix the encoding of the NEWS file chmod 644 %{packname}/inst/NEWS iconv -f ISO88591 -t UTF8 -o NEWS %{packname}/inst/NEWS mv -f NEWS %{packname}/inst %build %install # Specific installation procedure for R mkdir -p $RPM_BUILD_ROOT%{_libdir}/R/library %{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname} # Remove the temporary object files test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) # Remove the generic cascading style sheet for R rm -rf $RPM_BUILD_ROOT%{_libdir}/R/library/R.css %check # check needs a lot. # %%{_bindir}/R CMD check %%{packname} %files %dir %{_libdir}/R/library/%{packname} %doc %{_libdir}/R/library/%{packname}/CITATION %doc %{_libdir}/R/library/%{packname}/data %doc %{_libdir}/R/library/%{packname}/doc %doc %{_libdir}/R/library/%{packname}/html %doc %{_libdir}/R/library/%{packname}/DESCRIPTION %doc %{_libdir}/R/library/%{packname}/NEWS %{_libdir}/R/library/%{packname}/INDEX %{_libdir}/R/library/%{packname}/NAMESPACE %{_libdir}/R/library/%{packname}/Meta %{_libdir}/R/library/%{packname}/R %{_libdir}/R/library/%{packname}/help %{_libdir}/R/library/%{packname}/libs/%{packname}.so %changelog * Fri Apr 21 2023 Iñaki Úcar - 1.6.9-3 - R-maint-sig mass rebuild * Wed Jan 18 2023 Fedora Release Engineering - 1.6.9-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Fri Sep 2 2022 Tom Callaway - 1.6.9-1 - update to 1.6.9 - rebuild for R 4.2.1 * Wed Jul 20 2022 Fedora Release Engineering - 1.6.8-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Wed Jan 19 2022 Fedora Release Engineering - 1.6.8-10 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Wed Jul 21 2021 Fedora Release Engineering - 1.6.8-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Tue Jun 15 2021 Tom Callaway - 1.6.8-8 - Rebuilt for R 4.1.0 * Mon Jan 25 2021 Fedora Release Engineering - 1.6.8-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Mon Aug 10 2020 Tom Callaway - 1.6.8-6 - rebuild for FlexiBLAS R * Sat Aug 01 2020 Fedora Release Engineering - 1.6.8-5 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Mon Jul 27 2020 Fedora Release Engineering - 1.6.8-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Sun Jun 7 2020 Tom Callaway - 1.6.8-3 - rebuild for R 4 * Tue Feb 18 2020 Tom Callaway - 1.6.8-2 - rebuild against R without libRlapack.so * Thu Feb 06 2020 Denis Arnaud 1.6.8-1 - Upgrade to 1.6.8 * Tue Jan 28 2020 Fedora Release Engineering - 1.6.6-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Nov 21 2019 Elliott Sales de Andrade - 1.6.6-6 - Exclude Suggests for unavailable packages * Mon Aug 12 2019 Elliott Sales de Andrade - 1.6.6-5 - Remove explicit dependencies provided by automatic dependency generator * Wed Jul 24 2019 Fedora Release Engineering - 1.6.6-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Thu Jan 31 2019 Fedora Release Engineering - 1.6.6-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Thu Jul 12 2018 Fedora Release Engineering - 1.6.6-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Fri May 18 2018 Tom Callaway - 1.6.6-1 - Update to 1.6.6 * Wed Feb 07 2018 Fedora Release Engineering - 1.6.4-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Wed Aug 02 2017 Fedora Release Engineering - 1.6.4-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Wed Jul 26 2017 Fedora Release Engineering - 1.6.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Tue May 30 2017 Tom Callaway - 1.6.4-1 - update to 1.6.4 * Fri Feb 10 2017 Fedora Release Engineering - 1.3-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Wed Feb 03 2016 Fedora Release Engineering - 1.3-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Tue Jun 16 2015 Fedora Release Engineering - 1.3-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Fri Aug 15 2014 Fedora Release Engineering - 1.3-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Fri Jun 06 2014 Fedora Release Engineering - 1.3-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Thu May 8 2014 Tom Callaway - 1.3-1 - update to 1.3 * Sun Dec 29 2013 Denis Arnaud 1.2-1 - Update to 1.2 * Fri Aug 02 2013 Fedora Release Engineering - 1.1.4-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Thu Apr 11 2013 Tom Callaway - 1.1.4-1 - update to 1.1.4 * Wed Feb 13 2013 Fedora Release Engineering - 1.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Wed Jul 18 2012 Fedora Release Engineering - 1.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild * Thu Jan 12 2012 Fedora Release Engineering - 1.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild * Tue Nov 8 2011 Tom Callaway - 1.1-1 - update to 1.1 * Mon Feb 07 2011 Fedora Release Engineering - 0.9.5-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild * Thu Jan 21 2010 Tom "spot" Callaway - 0.9.5-2 - fix tag mistake * Thu Jan 21 2010 Tom "spot" Callaway - 0.9.5-1 - update to 0.9.5 - cleanup package to fix FTBFS * Fri Jul 24 2009 Fedora Release Engineering - 0.9.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild * Tue Jul 14 2009 Denis Arnaud 0.9.1-2 - Suppressed the unused definition of the packrel variable * Fri Jun 12 2009 Denis Arnaud 0.9.1-1 - Integrated the new upstream (0.9.1) version * Sat Jun 06 2009 Denis Arnaud 0.8.2-2 - Altered the license so as to reflect upstream, after clarification with them * Sun May 03 2009 Denis Arnaud 0.8.2-1 - Initial package creation