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--- bcftools-1.9-clean/config.mk.in	2018-03-15 14:28:19.000000000 +0000
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+++ bcftools-1.9-after/config.mk.in	2019-11-06 22:13:02.000000000 +0000
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@@ -50,7 +50,8 @@
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 PLATFORM   = @PLATFORM@
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 PLUGINS_ENABLED = @enable_bcftools_plugins@
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-plugindir = @bcf_plugindir@
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+plugindir  = @bcf_plugindir@
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+pluginpath = @bcf_pluginpath@
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 PLUGIN_EXT = @PLUGIN_EXT@
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 @Hsource@HTSDIR = @HTSDIR@
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--- bcftools-1.9-clean/configure.ac	2018-07-03 16:54:58.000000000 +0100
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+++ bcftools-1.9-after/configure.ac	2019-11-06 22:13:02.000000000 +0000
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@@ -71,7 +71,7 @@
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      no)  with_bcf_plugin_path= ;;
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    esac],
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   [with_bcf_plugin_path=$with_bcf_plugin_dir])
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-AC_SUBST([PLUGINPATH], $with_bcf_plugin_path)
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+AC_SUBST([bcf_pluginpath], $with_bcf_plugin_path)
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 AC_ARG_ENABLE([perl-filters],
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   [AS_HELP_STRING([--enable-perl-filters],
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--- bcftools-1.9-clean/configure	2019-11-06 22:16:31.000000000 +0000
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+++ bcftools-1.9-after/configure	2019-11-06 22:16:43.000000000 +0000
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@@ -588,7 +588,7 @@
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 HTSDIR
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 subdirs
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 enable_perl_filters
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-PLUGINPATH
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+bcf_pluginpath
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 bcf_plugindir
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 enable_bcftools_plugins
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 GREP
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@@ -3237,7 +3237,7 @@
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   with_bcf_plugin_path=$with_bcf_plugin_dir
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 fi
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-PLUGINPATH=$with_bcf_plugin_path
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+bcf_pluginpath=$with_bcf_plugin_path
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 # Check whether --enable-perl-filters was given.