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Name: bwa
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Version: 0.7.5a
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Release: 2%{?dist}
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Summary: Burrows-Wheeler Alignment tool
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Group: Applications/Engineering
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License: GPLv3
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URL: http://bio-bwa.sourceforge.net/
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Source0: http://downloads.sourceforge.net/bio-%{name}/%{name}-%{version}.tar.bz2
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# 0.7.x versions only build on x86_64
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ExclusiveArch: x86_64
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: zlib-devel
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%description
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BWA is a program for aligning sequencing reads against a large
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reference genome (e.g. human genome). It has two major components, one
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for read shorter than 150bp and the other for longer reads.
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%prep
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%setup -q
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%build
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make %{?_smp_mflags} CFLAGS="%{optflags}"
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%install
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rm -rf %{buildroot}
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mkdir -p %{buildroot}/%{_bindir}
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mkdir -p %{buildroot}/%{_mandir}/man1
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install -m 0755 bwa %{buildroot}/%{_bindir}
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install -m 0755 qualfa2fq.pl %{buildroot}/%{_bindir}
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install -m 0755 xa2multi.pl %{buildroot}/%{_bindir}
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install -m 0644 bwa.1 %{buildroot}/%{_mandir}/man1/bwa.1
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%clean
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rm -rf %{buildroot}
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%files
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%defattr(-,root,root,-)
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%doc COPYING NEWS
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%{_mandir}/man1/%{name}.1*
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%{_bindir}/bwa
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%{_bindir}/qualfa2fq.pl
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%{_bindir}/xa2multi.pl
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%changelog
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* Sun Oct 27 2013 Adam Huffman <bloch@verdurin.com> - 0.7.5a-2
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- Remove nosse2 patch because 0.7+ versions only build on x86_64
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* Sat Oct 26 2013 Adam Huffman <bloch@verdurin.com> - 0.7.5a-1
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- Update to upstream 0.7.5a
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* Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.1-7
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
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* Thu Jul 18 2013 Petr Pisar <ppisar@redhat.com> - 0.6.1-6
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- Perl 5.18 rebuild
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* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.1-5
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
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* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.1-4
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
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* Mon May 28 2012 Dan HorĂ¡k <dan[at]danny.cz> - 0.6.1-3
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- enable SSE2 on x86_64 only, fixes build on secondary arches
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* Sun May 13 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.6.1-2
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- add patch to avoid SSE2 on i386
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* Wed Jan 11 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.6.1-1
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- update to 0.6.1
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* Thu Feb 17 2011 Adam Huffman <bloch@verdurin.com> - 0.5.9-1
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- new upstream release 0.5.9
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* Tue Feb 08 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org>
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
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* Wed Jan 5 2011 Adam Huffman <bloch@verdurin.com> - 0.5.8c-1
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- upstream bugfix release
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* Tue Jul 20 2010 Adam Huffman <bloch@verdurin.com> - 0.5.8a-1
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- new upstream release
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* Sat May 29 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-2
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- fix source URL
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- install manpage
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- fix cflags
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* Fri May 28 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-1
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- initial version
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