From 7228568a7e55794fe1c23496d814aa3a72744ac2 Mon Sep 17 00:00:00 2001
From: verdurin <verdurin@fedoraproject.org>
Date: Jun 07 2010 23:06:19 +0000
Subject: Initial import


---

diff --git a/.cvsignore b/.cvsignore
index e69de29..0c196a9 100644
--- a/.cvsignore
+++ b/.cvsignore
@@ -0,0 +1 @@
+bwa-0.5.7.tar.bz2
diff --git a/bwa.spec b/bwa.spec
new file mode 100644
index 0000000..6495e18
--- /dev/null
+++ b/bwa.spec
@@ -0,0 +1,60 @@
+Name:           bwa
+Version:        0.5.7
+Release:        2%{?dist}
+Summary:        Burrows-Wheeler Alignment tool
+
+Group:          Applications/Engineering
+License:        GPLv3
+URL:            http://bio-bwa.sourceforge.net/
+Source0:        http://downloads.sourceforge.net/bio-%{name}/%{name}-%{version}.tar.bz2
+BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
+
+BuildRequires:  zlib-devel
+
+%description
+
+BWA is a program for aligning sequencing reads against a large
+reference genome (e.g. human genome). It has two major components, one
+for read shorter than 150bp and the other for longer reads.
+
+%prep
+%setup -q
+
+
+%build
+make %{?_smp_mflags} CFLAGS="%{optflags}"
+
+
+%install
+rm -rf %{buildroot}
+mkdir -p %{buildroot}/%{_bindir}
+mkdir -p %{buildroot}/%{_mandir}/man1
+
+install -m 0755 bwa %{buildroot}/%{_bindir}
+install -m 0755 solid2fastq.pl %{buildroot}/%{_bindir}
+install -m 0755 qualfa2fq.pl %{buildroot}/%{_bindir}
+
+install -m 0644 bwa.1 %{buildroot}/%{_mandir}/man1/bwa.1
+
+%clean
+rm -rf %{buildroot}
+
+
+%files
+%defattr(-,root,root,-)
+%doc COPYING NEWS 
+%{_mandir}/man1/%{name}.1*
+%{_bindir}/bwa
+%{_bindir}/qualfa2fq.pl
+%{_bindir}/solid2fastq.pl
+
+
+%changelog
+* Sat May 29 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-2
+- fix source URL
+- install manpage
+- fix cflags
+
+* Fri May 28 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-1
+- initial version
+
diff --git a/import.log b/import.log
new file mode 100644
index 0000000..0d837dc
--- /dev/null
+++ b/import.log
@@ -0,0 +1 @@
+bwa-0_5_7-2_fc12:F-12:bwa-0.5.7-2.fc12.src.rpm:1275951921
diff --git a/sources b/sources
index e69de29..a57686e 100644
--- a/sources
+++ b/sources
@@ -0,0 +1 @@
+ec1e467ad7a0bc106b5f610f17d9e95a  bwa-0.5.7.tar.bz2