Name:           dcm2niix

Version:        1.0.20220720

Release:        4%{?dist}

Summary:        DICOM to NIfTI converter

License:        BSD

URL:            http://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage

Source0:        https://github.com/rordenlab/%{name}/archive/v%{version}/%{name}-v%{version}.tar.gz

# Patch for new yaml-cpp using CMake config files

# https://github.com/rordenlab/dcm2niix/issues/647

Patch0:         dcm2niix-yaml-cpp.patch

BuildRequires:  gcc-c++

BuildRequires:  cmake

BuildRequires:  nifticlib-devel

BuildRequires:  zlib-devel

BuildRequires:  turbojpeg-devel

BuildRequires:  git

BuildRequires:  yaml-cpp-devel

BuildRequires:  CharLS-devel

BuildRequires:  openjpeg2-devel

BuildRequires:  python3-sphinx

Provides:       %{name}%{?_isa} = %{version}-%{release}

# console/ujpeg.{h,cpp}

# https://github.com/neurolabusc/dcm2niix/issues/8

Provides:       bundled(nanojpeg)

%description

dcm2niix is a tool designed to convert neuroimaging data from the NIfTI format

to the DICOM format.

%prep

%autosetup -p1 -n %{name}-%{version}

# Set executable name

sed -i 's/sphinx-build/sphinx-build-3/' docs/CMakeLists.txt

mkdir build/

%build

%cmake -DUSE_STATIC_RUNTIME=OFF -DUSE_TURBOJPEG=ON -DUSE_OPENJPEG=ON  -DUSE_JPEGLS=ON -DZLIB_IMPLEMENTATION=System -DBATCH_VERSION=ON -DBUILD_DOCS=ON

%cmake_build

%install

%cmake_install

%files

%doc README.md VERSIONS.md

%license license.txt

%{_bindir}/%{name}

%{_bindir}/dcm2niibatch

%{_mandir}/man1/%{name}.1*

%{_mandir}/man1/dcm2niibatch.1*

%changelog

* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20220720-4

- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild

* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20220720-3

- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild

* Tue Nov 08 2022 Richard Shaw <hobbes1069@gmail.com> - 1.0.20220720-2

- Rebuild for yaml-cpp 0.7.0.

* Sun Aug 07 2022 Alessio <alciregi@fedoraproject.org> - 1.0.20220720-1

- Update to new version

* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20190902-9

- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild

* Fri May 20 2022 Sandro Mani <manisandro@gmail.com> - 1.0.20190902-8

- Rebuild for gdal-3.5.0 and/or openjpeg-2.5.0

* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20190902-7

- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild

* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20190902-6

- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20190902-5

- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild

* Sat Aug 22 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.0.20190902-4

- Fix FTBFS

* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20190902-3

- Second attempt - Rebuilt for

  https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild

* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20190902-2

- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild

* Sat Feb 01 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.0.20190902-1

- Update to new version

* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20180622-6

- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

* Fri Oct 18 2019 Richard Shaw <hobbes1069@gmail.com> - 1.0.20180622-5

- Rebuild for yaml-cpp 0.6.3.

* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20180622-4

- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild

* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.20180622-3

- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild

* Fri Nov 09 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.0.20180622-2

- Remove unneeded patch from spec

* Fri Nov 09 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.0.20180622-1

- Update to latest upstream release

- Enable multiple file formats

- Generate docs

- Generate batch binary

* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.0-0.7.gitebc72ae

- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild

* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.0-0.6.gitebc72ae

- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild

* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.0-0.5.gitebc72ae

- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild

* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.0-0.4.gitebc72ae

- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild

* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.0-0.3.gitebc72ae

- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild

* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.0.0-0.2.gitebc72ae

- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

* Sat Dec 05 2015 Igor Gnatenko <i.gnatenko.brain@gmail.com> - 0.0.0-0.1.gitebc72ae

- Initial package