# Enabled by default

%bcond_without tests

# note ABI does not change in patch releases

# https://sourceforge.net/p/gdcm/mailman/message/36768376/

# Docs do not build on i686 because some LaTeX deps are unsatisfied. So skip

# these docs entirely.

%bcond_with texdocs

Name:       gdcm

Version:    3.0.21

Release:    %autorelease

Summary:    Grassroots DiCoM is a C++ library to parse DICOM medical files

License:    BSD

URL:        http://gdcm.sourceforge.net/wiki/index.php/Main_Page

# Use github release

Source0:    https://github.com/malaterre/%{name}/archive/v%{version}/%{name}-%{version}.tar.gz

Source1:    http://downloads.sourceforge.net/project/gdcm/gdcmData/gdcmData/gdcmData.tar.gz

Patch1: 0001-3.0.1-Use-copyright.patch

# Fix for 1687233

Patch3: 0002-Fix-export-variables.patch

BuildRequires:  CharLS-devel >= 2.0

BuildRequires:  cmake

BuildRequires:  doxygen

BuildRequires:  libxslt-devel

BuildRequires:  dcmtk-devel

BuildRequires:  docbook5-style-xsl

BuildRequires:  docbook-style-xsl

BuildRequires:  expat-devel

BuildRequires:  fontconfig-devel

BuildRequires:  gcc

BuildRequires:  gcc-c++

BuildRequires:  git-core

BuildRequires:  graphviz

BuildRequires:  gl2ps-devel

BuildRequires:  libogg-devel

BuildRequires:  libtheora-devel

BuildRequires:  libuuid-devel

BuildRequires:  mesa-libOSMesa-devel

BuildRequires:  openssl-devel

BuildRequires:  pkgconfig(libopenjp2)

BuildRequires:  poppler-devel

BuildRequires:  python3-devel

BuildRequires:  swig

BuildRequires:  sqlite-devel

BuildRequires:  json-c-devel

BuildRequires:  libxml2-devel

BuildRequires:  make

# BuildRequires:  vtk-devel

# deps aren't available on i686, so we skip docs building entirely

%if %{with texdocs}

BuildRequires:  texlive-scheme-medium

BuildRequires:  tex(hanging.sty)

BuildRequires:  tex(tocloft.sty)

BuildRequires:  tex(newunicodechar.sty)

%endif

%description

Grassroots DiCoM (GDCM) is a C++ library for DICOM medical files.

It supports ACR-NEMA version 1 and 2 (huffman compression is not supported),

RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax.

It comes with a super fast scanner implementation to quickly scan hundreds of

DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE,

C-MOVE). PS 3.3 & 3.6 are distributed as XML files.

It also provides PS 3.15 certificates and password based mechanism to

anonymize and de-identify DICOM datasets.

%package    doc

Summary:    Includes html documentation for gdcm

BuildArch:  noarch

Provides:   %{name}-examples = %{version}-%{release}

Obsoletes:  %{name}-examples < %{version}-%{release}

%description doc

You should install the gdcm-doc package if you would like to

access upstream documentation for gdcm.

Includes CSharp, C++, Java, PHP and Python example programs for GDCM

in html pages

%package    applications

Summary:    Includes command line programs for GDCM

Requires:   %{name}%{?_isa} = %{version}-%{release}

%description applications

You should install the gdcm-applications package if you would like to

use command line programs part of GDCM. Includes tools to convert,

anonymize, manipulate, concatenate, and view DICOM files.

%package    devel

Summary:    Libraries and headers for GDCM

Requires:   %{name}%{?_isa} = %{version}-%{release}

Requires:   %{name}-applications%{?_isa} = %{version}-%{release}

%description devel

You should install the gdcm-devel package if you would like to

compile applications based on gdcm

%package -n python3-gdcm

Summary:    Python binding for GDCM

%{?python_provide:%python_provide python3-gdcm}

Requires:   %{name}%{?_isa} = %{version}-%{release}

%description -n python3-gdcm

You should install the python3-gdcm package if you would like to

used this library with python

%prep

%autosetup -n GDCM-%{version} -S git

# Data source

%setup -n GDCM-%{version} -q -T -D -a 1

# deps not available

%if %{with texdocs}

sed -i.backup 's/^GENERATE_LATEX.*=.*YES/GENERATE_LATEX = NO/' Utilities/doxygen/doxyfile.in

%endif

# Remove bundled utilities (we use Fedora's ones)

rm -rf Utilities/gdcmexpat

rm -rf Utilities/gdcmopenjpeg-v1

rm -rf Utilities/gdcmopenjpeg-v2

rm -rf Utilities/gdcmzlib

rm -rf Utilities/gdcmuuid

rm -rf Utilities/gdcmcharls

# Remove bundled utilities (we don't use them)

rm -rf Utilities/getopt

rm -rf Utilities/pvrg

rm -rf Utilities/rle

rm -rf Utilities/wxWidgets

# Needed for testing:

#rm -rf Utilities/gdcmmd5

%build

%cmake \

    -DCMAKE_VERBOSE_MAKEFILE=ON \

    -DGDCM_INSTALL_PACKAGE_DIR=%{_libdir}/cmake/%{name} \

    -DGDCM_INSTALL_INCLUDE_DIR=%{_includedir}/%{name} \

    -DGDCM_INSTALL_DOC_DIR=%{_docdir}/%{name} \

    -DGDCM_INSTALL_MAN_DIR=%{_mandir} \

    -DGDCM_INSTALL_LIB_DIR=%{_libdir} \

    -DGDCM_BUILD_TESTING:BOOL=ON \

    -DGDCM_DATA_ROOT=../gdcmData/ \

    -DGDCM_BUILD_EXAMPLES:BOOL=ON \

    -DGDCM_DOCUMENTATION:BOOL=OFF \

    -DGDCM_WRAP_PYTHON:BOOL=ON \

    -DPYTHON_EXECUTABLE=%{python3} \

    -DGDCM_INSTALL_PYTHONMODULE_DIR=%{python3_sitearch} \

    -DGDCM_WRAP_JAVA:BOOL=OFF \

    -DGDCM_WRAP_CSHARP:BOOL=OFF \

    -DGDCM_BUILD_SHARED_LIBS:BOOL=ON \

    -DGDCM_BUILD_APPLICATIONS:BOOL=ON \

    -DCMAKE_BUILD_TYPE:STRING="RelWithDebInfo" \

    -DGDCM_USE_VTK:BOOL=OFF \

    -DGDCM_USE_SYSTEM_CHARLS:BOOL=ON \

    -DGDCM_USE_SYSTEM_EXPAT:BOOL=ON \

    -DGDCM_USE_SYSTEM_OPENJPEG:BOOL=ON \

    -DGDCM_USE_SYSTEM_ZLIB:BOOL=ON \

    -DGDCM_USE_SYSTEM_UUID:BOOL=ON \

    -DGDCM_USE_SYSTEM_LJPEG:BOOL=OFF \

    -DGDCM_USE_SYSTEM_OPENSSL:BOOL=ON \

    -DGDCM_USE_JPEGLS:BOOL=ON \

    -DGDCM_USE_SYSTEM_LIBXML2:BOOL=ON \

    -DGDCM_USE_SYSTEM_JSON:BOOL=ON \

    -DGDCM_USE_SYSTEM_POPPLER:BOOL=ON

#Cannot build wrap_java:

#   -DGDCM_VTK_JAVA_JAR:PATH=/usr/share/java/vtk.jar no found!

#   yum provides */vtk.jar -> No results found

%cmake_build

%install

%cmake_install

%if %{with tests}

%check

# Making the tests informative only for now. Several failing tests (27/228):

# 11,40,48,49,107-109,111-114,130-135,146,149,,151-154,157,194,216,219

make test -C %{__cmake_builddir} || exit 0

%endif

%files

%doc AUTHORS README.md

%license Copyright.txt README.Copyright.txt

%{_libdir}/libgdcmCommon.so.3.0

%{_libdir}/libgdcmCommon.so.3.0.21

%{_libdir}/libgdcmDICT.so.3.0

%{_libdir}/libgdcmDICT.so.3.0.21

%{_libdir}/libgdcmDSED.so.3.0

%{_libdir}/libgdcmDSED.so.3.0.21

%{_libdir}/libgdcmIOD.so.3.0

%{_libdir}/libgdcmIOD.so.3.0.21

%{_libdir}/libgdcmMEXD.so.3.0

%{_libdir}/libgdcmMEXD.so.3.0.21

%{_libdir}/libgdcmMSFF.so.3.0

%{_libdir}/libgdcmMSFF.so.3.0.21

%{_libdir}/libgdcmjpeg12.so.3.0

%{_libdir}/libgdcmjpeg12.so.3.0.21

%{_libdir}/libgdcmjpeg16.so.3.0

%{_libdir}/libgdcmjpeg16.so.3.0.21

%{_libdir}/libgdcmjpeg8.so.3.0

%{_libdir}/libgdcmjpeg8.so.3.0.21

%{_libdir}/libgdcmmd5.so.3.0

%{_libdir}/libgdcmmd5.so.3.0.21

%{_libdir}/libsocketxx.so.1.2

%{_libdir}/libsocketxx.so.1.2.0

%{_datadir}/%{name}-3.0/XML/

%files doc

%doc %{_docdir}/%{name}

%files applications

%{_bindir}/gdcmanon

%{_bindir}/gdcmconv

%{_bindir}/gdcmclean

%{_bindir}/gdcmdiff

%{_bindir}/gdcmdump

%{_bindir}/gdcmgendir

%{_bindir}/gdcmimg

%{_bindir}/gdcminfo

%{_bindir}/gdcmpap3

%{_bindir}/gdcmpdf

%{_bindir}/gdcmraw

%{_bindir}/gdcmscanner

%{_bindir}/gdcmscu

%{_bindir}/gdcmtar

%{_bindir}/gdcmxml

%doc %{_mandir}/man1/*.1*

%files devel

%{_includedir}/%{name}/

%{_libdir}/libgdcmCommon.so

%{_libdir}/libgdcmDICT.so

%{_libdir}/libgdcmDSED.so

%{_libdir}/libgdcmIOD.so

%{_libdir}/libgdcmMEXD.so

%{_libdir}/libgdcmMSFF.so

%{_libdir}/libgdcmjpeg12.so

%{_libdir}/libgdcmjpeg16.so

%{_libdir}/libgdcmjpeg8.so

%{_libdir}/libgdcmmd5.so

%{_libdir}/libsocketxx.so

%{_libdir}/cmake/%{name}/

%files -n python3-gdcm

%{python3_sitearch}/%{name}*.py

%{python3_sitearch}/_%{name}swig.so

%{python3_sitearch}/__pycache__/%{name}*

%changelog

%autochangelog