rpms / h5py

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  1.   rawhide
  2.   h5py.spec
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%global commit a8e82bcd63de14daddbc84c250a36c0ee8c850f6
%global shortcommit %(c=%{commit}; echo ${c:0:7})

Summary:        A Python interface to the HDF5 library
Name:           h5py
Version:        3.11.0
Release:        1%{?dist}
License:        BSD
URL:            http://www.h5py.org/
Source0:        https://files.pythonhosted.org/packages/source/h/h5py/h5py-%{version}.tar.gz
# drop the unnecessary workaround for float128 type after
# https://fedoraproject.org/wiki/Changes/PPC64LE_Float128_Transition
# in F-36
Patch0:         h5py-3.10.0-ppc-float128.patch
Patch1:         h5py-3.10.0-python-crash-file-test2.patch
BuildRequires:  gcc
BuildRequires:  hdf5-devel
BuildRequires:  liblzf-devel
BuildRequires:  python%{python3_pkgversion}-Cython >= 0.23
BuildRequires:  python%{python3_pkgversion}-devel >= 3.2
BuildRequires:  python%{python3_pkgversion}-setuptools
BuildRequires:  python%{python3_pkgversion}-cached_property
BuildRequires:  python%{python3_pkgversion}-numpy >= 1.7
BuildRequires:  python%{python3_pkgversion}-pkgconfig
BuildRequires:  python%{python3_pkgversion}-pip
BuildRequires:  python%{python3_pkgversion}-pytest
BuildRequires:  python%{python3_pkgversion}-pytest-mpi
BuildRequires:  python%{python3_pkgversion}-six
BuildRequires:  python%{python3_pkgversion}-sphinx

# MPI builds
%ifarch %{ix86}
%bcond openmpi 0
%else
%bcond openmpi 1
%endif
%if %{with openmpi}
BuildRequires:  hdf5-openmpi-devel
BuildRequires:  openmpi-devel
BuildRequires:  python%{python3_pkgversion}-mpi4py-openmpi
%endif
%ifarch %{ix86}
%bcond mpich 0
%else
%bcond mpich 1
%endif
%if %{with mpich}
BuildRequires:  hdf5-mpich-devel
BuildRequires:  mpich-devel
BuildRequires:  python%{python3_pkgversion}-mpi4py-mpich
%endif

%global _description\
The h5py package provides both a high- and low-level interface to the\
HDF5 library from Python. The low-level interface is intended to be a\
complete wrapping of the HDF5 API, while the high-level component\
supports access to HDF5 files, data sets and groups using established\
Python and NumPy concepts.\
\
A strong emphasis on automatic conversion between Python (Numpy)\
data types and data structures and their HDF5 equivalents vastly\
simplifies the process of reading and writing data from Python.

%description %_description

%package     -n python%{python3_pkgversion}-h5py
Summary:        %{summary}
Requires:       hdf5%{_isa} = %{_hdf5_version}
Requires:       python%{python3_pkgversion}-cached_property
Requires:       python%{python3_pkgversion}-numpy >= 1.7
Requires:       python%{python3_pkgversion}-six
%{?python_provide:%python_provide python%{python3_pkgversion}-h5py}
%description -n python%{python3_pkgversion}-h5py %_description

%if %{with openmpi}
%package     -n python%{python3_pkgversion}-h5py-openmpi
Summary:        A Python interface to the HDF5 library using OpenMPI
Requires:       hdf5%{_isa} = %{_hdf5_version}
Requires:       python%{python3_pkgversion}-cached_property
Requires:       python%{python3_pkgversion}-numpy >= 1.7
Requires:       python%{python3_pkgversion}-six
Requires:       python3-mpi4py-openmpi
Requires:       openmpi
%description -n python%{python3_pkgversion}-h5py-openmpi %_description
%endif

%if %{with mpich}
%package     -n python%{python3_pkgversion}-h5py-mpich
Summary:        A Python interface to the HDF5 library using MPICH
Requires:       hdf5%{_isa} = %{_hdf5_version}
Requires:       python%{python3_pkgversion}-cached_property
Requires:       python%{python3_pkgversion}-numpy >= 1.7
Requires:       python%{python3_pkgversion}-six
Requires:       python3-mpi4py-openmpi
Requires:       python3-mpi4py-mpich
Requires:       mpich
%description -n python%{python3_pkgversion}-h5py-mpich %_description
%endif


%prep
%autosetup -N -c -n %{name}-%{version}
pushd %{name}-%{version}
%autopatch -p1
popd
mv %{name}-%{version} serial
cd serial
%{__python3} api_gen.py
cd -
%{?with_openmpi:cp -al serial openmpi}
%{?with_mpich:cp -al serial mpich}


%build
# Upstream requires a specific numpy without this
export H5PY_SETUP_REQUIRES=0
export H5PY_SYSTEM_LZF=1
# serial
export CFLAGS="%{optflags} -fopenmp"
cd serial
%py3_build
cd -

# MPI
export CC=mpicc
export HDF5_MPI="ON"

%if %{with openmpi}
cd openmpi
%{_openmpi_load}
%py3_build
%{_openmpi_unload}
cd -
%endif

%if %{with mpich}
cd mpich
%{_mpich_load}
%py3_build
%{_mpich_unload}
cd -
%endif


%install
# Upstream requires a specific numpy without this
export H5PY_SETUP_REQUIRES=0
export H5PY_SYSTEM_LZF=1

%if %{with openmpi}
cd openmpi
%py3_install
rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
mkdir -p %{buildroot}%{python3_sitearch}/openmpi
mv %{buildroot}%{python3_sitearch}/%{name}/ \
   %{buildroot}%{python3_sitearch}/%{name}*.egg-info \
   %{buildroot}%{python3_sitearch}/openmpi
cd -
%endif

%if %{with mpich}
cd mpich
%py3_install
rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
mkdir -p %{buildroot}%{python3_sitearch}/mpich
mv %{buildroot}%{python3_sitearch}/%{name}/ \
   %{buildroot}%{python3_sitearch}/%{name}*.egg-info \
   %{buildroot}%{python3_sitearch}/mpich
cd -
%endif

# serial part must be last (not to overwrite files)
cd serial
%py3_install
rm -rf %{buildroot}%{python3_sitearch}/h5py/tests
cd -


%check
# Upstream requires a specific numpy without this
export H5PY_SETUP_REQUIRES=0
export H5PY_SYSTEM_LZF=1
# i686 test failure
# https://github.com/h5py/h5py/issues/1337
%ifarch %ix86
fail=0
%else
fail=1
%endif

export PYTHONPATH=$(echo serial/build/lib*)
%{__python3} -m pytest --pyargs h5py -rxXs ${PYTHONPATH} || exit $fail

%if %{with openmpi}
export PYTHONPATH=$(echo openmpi/build/lib*)
%{_openmpi_load}
mpirun -- %{__python3} -m pytest --pyargs h5py -rxXs --with-mpi ${PYTHONPATH} || exit $fail
%{_openmpi_unload}
%endif

%if %{with mpich}
export PYTHONPATH=$(echo mpich/build/lib*)
%{_mpich_load}
mpirun %{__python3} -m pytest --pyargs h5py -rxXs --with-mpi ${PYTHONPATH} || exit $fail
%{_mpich_unload}
%endif


%files -n python%{python3_pkgversion}-h5py
%license serial/licenses/*.txt
#doc serial/ANN.rst serial/README.rst serial/examples
%doc serial/README.rst serial/examples
%{python3_sitearch}/%{name}/
%{python3_sitearch}/%{name}-%{version}-*.egg-info

%if %{with openmpi}
%files -n python%{python3_pkgversion}-h5py-openmpi
%license openmpi/licenses/*.txt
%doc openmpi/README.rst
%{python3_sitearch}/openmpi/%{name}/
%{python3_sitearch}/openmpi/%{name}-%{version}-*.egg-info
%endif

%if %{with mpich}
%files -n python%{python3_pkgversion}-h5py-mpich
%license mpich/licenses/*.txt
%doc mpich/README.rst
%{python3_sitearch}/mpich/%{name}/
%{python3_sitearch}/mpich/%{name}-%{version}-*.egg-info
%endif


%changelog
* Wed Apr 10 2024 Terje Rosten <terje.rosten@ntnu.no> - 3.11.0-1
- Update to 3.11.0

* Tue Feb 27 2024 Orion Poplawski <orion@nwra.com> - 3.10.0-7
- Re-enable ix86

* Thu Feb 22 2024 Christoph Junghans <junghans@votca.org> - 3.10.0-6
- Re-enable openmpi build and drop ix86

* Fri Feb 16 2024 Orion Poplawski <orion@nwra.com> - 3.10.0-5
- Add patch to properly cast const pointers (FTBFS bz#2261231)

* Mon Feb 05 2024 Terje Rosten <terje.rosten@ntnu.no> - 3.10.0-4
- OpenMPI and MPICH have dropped i686 support

* Wed Jan 24 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.10.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild

* Sat Jan 20 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.10.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild

* Mon Oct 09 2023 Terje Rosten <terje.rosten@ntnu.no> - 3.10.0-1
- Update to 3.10.0

* Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.8.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild

* Wed Jul 12 2023 Miro Hrončok <mhroncok@redhat.com> - 3.8.0-3
- Temporarily disable the openmpi build
- Workaround for: rhzb#2220011

* Thu Jun 15 2023 Python Maint <python-maint@redhat.com> - 3.8.0-2
- Rebuilt for Python 3.12

* Sun Feb 26 2023 Orion Poplawski <orion@nwra.com> - 3.8.0-1
- Update to 3.8.0

* Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.7.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild

* Thu Jul 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.7.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild

* Mon Jun 13 2022 Python Maint <python-maint@redhat.com> - 3.7.0-2
- Rebuilt for Python 3.11

* Tue May 24 2022 Terje Rosten <terje.rosten@ntnu.no> - 3.7.0-1
- Update to 3.7.0

* Sun Jan 23 2022 Terje Rosten <terje.rosten@ntnu.no> - 3.6.0-1
- Update to 3.6.0

* Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.4.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild

* Sun Nov 21 2021 Orion Poplawski <orion@nwra.com> - 3.4.0-3
- Rebuild for hdf5 1.12.1

* Sun Oct 03 2021 Terje Rosten <terje.rosten@ntnu.no> - 3.4.0-2
- Revert an upstream commit that caused crash in PySCF (rhbz#2009628)

* Sat Sep 18 2021 Terje Rosten <terje.rosten@ntnu.no> - 3.4.0-1
- Update to 3.4.0

* Tue Aug 10 2021 Orion Poplawski <orion@nwra.com> - 3.2.1-4
- Rebuild for hdf5 1.10.7

* Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.2.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 3.2.1-2
- Rebuilt for Python 3.10

* Tue Mar 09 2021 Orion Poplawski <orion@nwra.com> - 3.2.1-1
- Update to 3.2.1

* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.1.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild

* Sat Nov 07 2020 Terje Rosten <terje.rosten@ntnu.no> - 3.1.0-1
- Update to 3.1.0

* Fri Oct 30 2020 Orion Poplawski <orion@nwra.com> - 3.0.0-1
- Update to 3.0.0

* Mon Jul 27 2020 Terje Rosten <terje.rosten@ntnu.no> - 2.10.0-4
- Add openmpi and mpich subpackages

* Thu Jun 25 2020 Orion Poplawski <orion@cora.nwra.com> - 2.10.0-3
- Rebuild for hdf5 1.10.6

* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 2.10.0-2
- Rebuilt for Python 3.9

* Sun May 17 2020 Terje Rosten <terje.rosten@ntnu.no> - 2.10.0-1
- Add commits from 2.10.x branch

* Wed Jan 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-7
- Rebuilt for Python 3.8.0rc1 (#1748018)

* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-6
- Rebuilt for Python 3.8

* Thu Jul 25 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild

* Sat Mar 16 2019 Orion Poplawski <orion@nwra.com> - 2.9.0-4
- Rebuild for hdf5 1.10.5

* Fri Feb 01 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.9.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild

* Mon Jan 14 2019 Miro Hrončok <mhroncok@redhat.com> - 2.9.0-2
- Subpackage python2-h5py has been removed
  See https://fedoraproject.org/wiki/Changes/Mass_Python_2_Package_Removal

* Mon Jan 7 2019 Orion Poplawski <orion@nwra.com> - 2.9.0-1
- Update to 2.9.0
- Drop python2 for Fedora 30+ (bug #1663834)

* Fri Jul 13 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.8.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild

* Tue Jun 19 2018 Miro Hrončok <mhroncok@redhat.com> - 2.8.0-2
- Rebuilt for Python 3.7

* Tue Jun 05 2018 Terje Rosten <terje.rosten@ntnu.no> - 2.8.0-1
- Update to 2.8.0

* Thu Mar 01 2018 Iryna Shcherbina <ishcherb@redhat.com> - 2.7.1-4
- Update Python 2 dependency declarations to new packaging standards
  (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3)
- Minor clean up

* Tue Feb 13 2018 Christian Dersch <lupinix@mailbox.org> - 2.7.1-3
- Added patch h5py-Dont-reorder-compound-types (required for new numpy>=1.14)

* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild

* Mon Sep 04 2017 Terje Rosten <terje.rosten@ntnu.no> - 2.7.1-1
- Update to 2.7.1

* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild

* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.7.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild

* Fri Jul 07 2017 Igor Gnatenko <ignatenko@redhat.com> - 2.7.0-2
- Rebuild due to bug in RPM (RHBZ #1468476)

* Mon Mar 20 2017 Orion Poplawski <orion@cora.nwra.com> - 2.7.0-1
- Update to 2.7.0

* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.6.0-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild

* Mon Dec 19 2016 Miro Hrončok <mhroncok@redhat.com> - 2.6.0-6
- Rebuild for Python 3.6

* Tue Dec 06 2016 Orion Poplawski <orion@cora.nwra.com> - 2.6.0-5
- Rebuild for hdf5 1.8.18

* Tue Dec 06 2016 Orion Poplawski <orion@cora.nwra.com> - 2.6.0-4
- Rebuild for hdf5 1.8.18

* Tue Jul 19 2016 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.6.0-3
- https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages

* Wed Jun 29 2016 Orion Poplawski <orion@cora.nwra.com> - 2.6.0-2
- Rebuild for hdf5 1.8.17

* Sun Apr 10 2016 Orion Poplawski <orion@cora.nwra.com> - 2.6.0-1
- Update to 2.6.0
- Modernize spec and ship python2-h5py package

* Wed Mar 23 2016 Orion Poplawski <orion@cora.nwra.com> - 2.5.0-8
- Tests run okay now

* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.0-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

* Thu Jan 21 2016 Orion Poplawski <orion@cora.nwra.com> - 2.5.0-6
- Rebuild for hdf5 1.8.16

* Tue Nov 10 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.5.0-5
- Rebuilt for https://fedoraproject.org/wiki/Changes/python3.5

* Wed Jun 17 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.5.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild

* Mon May 18 2015 Terje Rosten <terje.rosten@ntnu.no> - 2.5.0-3
- Add six and pkgconfig dep (thanks Orion!)

* Sun May 17 2015 Orion Poplawski <orion@cora.nwra.com> - 2.5.0-2
- Rebuild for hdf5 1.8.15

* Mon Apr 13 2015 Orion Poplawski <orion@cora.nwra.com> - 2.5.0-1
- Update to 2.5.0

* Wed Jan 7 2015 Orion Poplawski <orion@cora.nwra.com> - 2.4.0-1
- Update to 2.4.0

* Sat Aug 16 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild

* Wed Jun 25 2014 Orion Poplawski <orion@cora.nwra.com> - 2.3.1-1
- Update to 2.3.1

* Tue Jun 10 2014 Orion Poplawski <orion@cora.nwra.com> - 2.3.0-4
- Rebuild for hdf 1.8.13

* Sat Jun 07 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.3.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild

* Fri May 9 2014 Orion Poplawski <orion@cora.nwra.com> - 2.3.0-2
- Rebuild for Python 3.4

* Tue Apr 22 2014 Orion Poplawski <orion@cora.nwra.com> - 2.3.0-1
- Update to 2.3.0

* Sun Jan 5 2014 Orion Poplawski <orion@cora.nwra.com> - 2.2.1-2
- Rebuild for hdf5 1.8.12
- Add requires for hdf5 version

* Thu Dec 19 2013 Orion Poplawski <orion@cora.nwra.com> - 2.2.1-1
- 2.2.1

* Thu Sep 26 2013 Terje Rosten <terje.rosten@ntnu.no> - 2.2.0-1
- 2.2.0

* Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.1.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild

* Mon Jun 10 2013 Terje Rosten <terje.rosten@ntnu.no> - 2.1.3-1
- 2.1.3
- add Python 3 import patches (#962250)

* Thu May 16 2013 Orion Poplawski <orion@cora.nwra.com> - 2.1.0-3
- rebuild for hdf5 1.8.11

* Thu Feb 14 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.1.0-2
- rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild

* Thu Dec 06 2012 Terje Rosten <terje.rosten@ntnu.no> - 2.1.0-1
- 2.1.0
- add Python 3 subpackage

* Thu Jul 19 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.0.1-2
- rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild

* Tue Jan 24 2012 Terje Rosten <terje.rosten@ntnu.no> - 2.0.1-1
- 2.0.1
- docs is removed
- rebase patch

* Fri Jan 13 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.3.1-5
- rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild

* Mon May 23 2011 Terje Rosten <terje.rosten@ntnu.no> - 1.3.1-4
- add patch from Steve Traylen (thanks!) to use system liblzf
 
* Thu Jan 13 2011 Terje Rosten <terje.rosten@ntnu.no> - 1.3.1-3
- fix buildroot
- add filter
- don't remove egg-info files
- remove explicit hdf5 req

* Sun Jan  2 2011 Terje Rosten <terje.rosten@ntnu.no> - 1.3.1-2
- build and ship docs as html

* Mon Dec 27 2010 Terje Rosten <terje.rosten@ntnu.no> - 1.3.1-1
- 1.3.1
- license is BSD only
- run tests
- new url

* Sat Jul  4 2009 Joseph Smidt <josephsmidt@gmail.com> - 1.2.0-1
- initial RPM release
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