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diff -rupN jack-1.9.8.old/doxyfile jack-1.9.8/doxyfile
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--- jack-1.9.8.old/doxyfile	2011-12-19 06:53:48.000000000 -0500
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+++ jack-1.9.8/doxyfile	2011-12-24 14:04:23.569998760 -0500
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@@ -574,22 +574,7 @@ WARN_LOGFILE           =
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 # directories like "/usr/src/myproject". Separate the files or directories
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 # with spaces.
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-INPUT                  = common \
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-                         posix \
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-                         macosx \
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-                         macosx/coreaudio/ \
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-			 macosx/coremidi/ \
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-                         linux \
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-                         linux/alsa \
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-			 linux/alsarawmidi \
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-			 linux/firewire \
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-			 linux/freebob \
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-                         windows \
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-                         windows/portaudio \
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-                         windows/winmme \
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-                         solaris \
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-			 solaris/oss \
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-                         common/jack/
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+INPUT                  = common/jack/
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 # This tag can be used to specify the character encoding of the source files
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 # that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is