<project name="Jmol" default="main" basedir=".">

      DocumentId  $Id$

  -->

  <taskdef resource="net/sf/antcontrib/antlib.xml">

    <classpath>

      <pathelement location="tools/ant-contrib.jar" />

    </classpath>

  </taskdef>

  <property file="${user.home}/.jmol.build.properties" />

  <property name="build.sysclasspath" value="ignore" />

  <property name="build.compiler" value="javac1.7" />

       property as the value of the source parameter -->

  <property name="java.version" value="1.7" />

  <property name="debug" value="on" />

  <property name="deprecation" value="off" />

  <property name="optimization" value="off" />

	<copy todir="" >

	  <fileset dir="src/org/jmol/viewer/">

	    <include name="Jmol.properties" />

	  </fileset>

	  <filterchain>

	    <striplinecomments>

	      <comment value="#" />

	    </striplinecomments>

	    <linecontains>

	      <contains value="Jmol.___" />

	    </linecontains>

	  </filterchain>

	</copy>

  <property file="Jmol.properties" prefix="Jmol.properties" />

  <property name="version" value="${Jmol.properties.Jmol.___JmolVersion}" />

  			  override = "true"

	          input="${version}"

  			  regexp='(")([^"]+)(")'

	          select="\2"

  		      global="true"

	          />

  <echo message="version=${version}" />

  <property name="jvxl_version" value="0.1" />

  <input message="private property file:" addproperty="Private.propertyFile" defaultValue="none" />

  <if><available file="${Private.propertyFile}" /><then>

  	<property file="${Private.propertyFile}" />

	<echo>using ${Private.keystore} ${Private.storetype}</echo>

  </then></if>

  <property name="tests.source.dir" value="source-tests" />

  <property name="lib.dir" value="jars" />

  <property name="plugin.dir" value="plugin-jars" />

  <property name="appjars.dir" value="build/appjars" />

  <property name="classes.dir" value="build/classes" />

  <property name="test-classes.dir" value="build/test-classes" />

  <property name="apisio.classes.dir" value="build/apisio-classes" />

  <property name="tests.dir" value="build/unit.tests" />

  <property name="javadoc.dir" value="build/javadoc" />

  <property name="docbook-xsl" value="docbook-xsl-1.76.1" />

  <property name="docbook-xml" value="docbook-xml-4.4" />

  <property name="naga.jar" value="naga-3_0.jar" />

  <property name="commons-cli.jar" value="commons-cli-1.2.jar" />

  <property name="inchi.jar" value="jni-inchi-0.7-jar-with-dependencies.jar" />

  <property name="saxon.jar" value="saxon.jar" />

  <property name="saxon.main" value="com.icl.saxon.StyleSheet" />

  <property name="selfsign.store" value="ca-cert/selfSignedCertificate/selfSignedCertificate.store" />

  <property name="selfsign.storetype" value="jks" />

  <property name="selfsign.storepass" value="selfSignedCertificate" />

  <property name="selfsign.alias" value="selfSignedCertificate" />

  <property name="tsa.url" value="http://timestamp.globalsign.com/scripts/timestamp.dll" />

  <property name="keystore.name" value="Must be set by user." />

  <property name="ikvm.home" value="Must be set by user." />

  <property file="proxy.properties" />

  <import file="tools/build-i18n.xml"/>

  <path id="project.class.path">

    <fileset dir="${lib.dir}">

      <include name="*.jar" />

    </fileset>

  </path>

    <fileset dir="${lib.dir}">

      <include name="*.jar" />

    </fileset>

  </path> -->

  <path id="apisio-project.class.path">

    <fileset dir="${lib.dir}">

      <include name="gnujaxp.jar" />

    </fileset>

  </path>

  <property name="sendAll"         value="true" />

  <property name="sendZip"         value="true" />

  <property name="dist.dir"        value="build/dist" />

  <property name="src.dir"         value="src" />

  <property name="temp.dir"        value="build/release" />

  <property name="web.dir"         value="/home/frs/project/j/jm/jmol" />

  <property name="web.host"        value="frs.sourceforge.net" /> 

  <property name="prefix.release"  value="Jmol " />

  <echo message="${dist.dir}" />

  <property file="${dist.dir}/Jmol.properties" prefix="Jmol.properties" />

  <property name="version" value="${Jmol.properties.Jmol.___JmolVersion}" />

	  override = "true"

	  input="${version}"

	  regexp='(")([^"]+)(")'

  	  select="\2"

      global="true"

  />

  <echo message="version=${version}" />

	<loadresource property="versionMajorMinor">

	  <string value="${version}"/>

	  <filterchain>

	    <tokenfilter>

		      <replaceregex pattern="([0-9]+[.][0-9]+)(.*)" replace="\1"/>

	    </tokenfilter>

	  </filterchain>

	</loadresource>

	<echo message="versionMajorMinor: ${versionMajorMinor}"/>

	<loadresource property="versionMajorMinorPatch">

	  <string value="${version}"/>

	  <filterchain>

	    <tokenfilter>

		      <replaceregex pattern="([^-]*)(-beta)(.*)" replace="\1"/>

	    </tokenfilter>

	  </filterchain>

	</loadresource>

	<echo message="versionMajorMinorPatch: ${versionMajorMinorPatch}"/>

		<loadresource property="betaFlag">

	  <string value="${version}"/>

	  <filterchain>

	    <tokenfilter>

	      <replaceregex pattern="([^-]*)(-beta)(.*)" replace="\2"/>

	    </tokenfilter>

	  </filterchain>

	</loadresource>

	<property name="pathdir-full" value="Jmol/Version" />

  	<if>

     <equals arg1="${betaFlag}" arg2="${version}" />

  	 <then>

  		<property name="pathdir"    value="${pathdir-full}" />

    </then>

  	<else>

  		<property name="pathdir"    value="Jmol-beta/Jmol" />

  	</else>

  	</if>

	<echo message="betaFlag: ${betaFlag}"/>

	<property name="path.release"    value="${pathdir} ${versionMajorMinor}" />

	<echo message="path.release: ${path.release}"/>

  <target name="deploy" >

      message="Destination Path for ${version} (clear to exit)"

      defaultvalue="${path.release}/${prefix.release}${versionMajorMinorPatch}"

      addproperty="uploadPath"

    />

 -->

      message="Filepath  ${uploadPath0} ?"

      validargs="y,n"

      defaultvalue="y"

      addproperty="do.scp"

    />

    <condition property="do.abort">

      <equals arg1="n" arg2="${do.scp}"/>

    </condition>

    <fail if="do.abort">Build aborted by user.</fail>

-->

      message="Please enter your username."

      addproperty="ssh.user"

    />

      message="Please enter your password."

      addproperty="ssh.password"

    />

-->

    this is the part that changed at SourceForge and no longer works. 

    BH 2023.11.16

  	<if>

     <equals arg1="${sendAll}" arg2="true" />

  	 <then>

    <echo message="Copying binary.zip to ${web.dir}" level="info"/>

         trust="yes" failonerror="true" verbose="true">

      <fileset dir="${temp.dir}">

        <include name="**/*.zip"/>

        <include name="**/*.properties"/>

      </fileset>

    </scp>

    <echo message="Copying binary.tar.gz to ${web.dir}" level="info"/>

         trust="yes" failonerror="true" verbose="true">

      <fileset dir="${temp.dir}">

        <include name="**/*-binary.tar.gz"/>

      </fileset>

    </scp>

  	    </then>

  	  	</if>

    <echo message="Copying full.tar.gz to ${web.dir}" level="info"/>

         trust="yes" failonerror="true" verbose="true">

      <fileset dir="${temp.dir}">

        <include name="**/*-full.tar.gz"/>

      </fileset>

    </scp>

    	-->

    <delete dir="${temp.dir}"/>

  </target>

  <target name="main" id="main" depends="init,jar" /> 

  <target name="all" id="all" depends="main"/> 

  <target name="init" id="init">

    <tstamp/>

  </target>

  <target name="initFailure" id="initFailure">

    <fail message="Init failed. See messages above." />

  </target>

  <target name="setup" id="setup">

    <condition property="docbook-xsl.uptodate">

      <and>

                  srcfile="doc/${docbook-xsl}.tar.gz" />

                  srcfile="build/${docbook-xsl}" />

      </and>

    </condition>

    <condition property="docbook-xml.uptodate">

      <and>

                  srcfile="doc/${docbook-xml}.zip" />

                  srcfile="build/docbook-xml" />

      </and>

    </condition>

    <condition property="jmolGuide.uptodate">

      <and>

        <uptodate targetfile="build/doc/JmolUserGuide/index.html">

                    includes="JmolGuide.docbook.xml, guide/*.docbook.xml"/>

        </uptodate>

        <uptodate targetfile="build/doc/JmolUserGuide_fr/index.html">

                    includes="JmolGuide_fr.docbook.xml, guide/*_fr.docbook.xml"/>

        </uptodate>

      </and>

    </condition>

    <condition property="jmolHistory.uptodate">

      <and>

        <uptodate targetfile="build/doc/JmolHistory/ChangeLog.html">

                    includes="JmolHistory.xml,JmolHistoryToHtml.xsl,history/changes.xml" />

        </uptodate>

        <uptodate targetfile="build/doc/JmolHistory/ChangeLog_fr.html">

                    includes="JmolHistory_fr.xml,JmolHistoryToHtml.xsl,history/changes_fr.xml" />

        </uptodate>

        <uptodate targetfile="build/doc/JmolHistory/ChangeLog_nl.html">

                    includes="JmolHistory_nl.xml,JmolHistoryToHtml.xsl,history/changes_nl.xml" />

        </uptodate>

        <uptodate targetfile="build/doc/JmolHistory/ChangeLog_ro.html">

                    includes="JmolHistory_ro.xml,JmolHistoryToHtml.xsl,history/changes_ro.xml" />

        </uptodate>

      </and>

    </condition>

    <condition property="jmolDevelopersGuide.uptodate">

      <and>

        <uptodate targetfile="build/doc/JmolDevelopersGuide.html">

                    includes="JmolDevelopersGuide.docbook.xml"/>

        </uptodate>

        <uptodate targetfile="build/doc/JmolDevelopersGuide_fr.html">

                    includes="JmolDevelopersGuide_fr.docbook.xml"/>

        </uptodate>

        <uptodate targetfile="build/doc/JmolDevelopersGuide_de.html">

                    includes="JmolDevelopersGuide_de.docbook.xml"/>

        </uptodate>

      </and>

    </condition>

    <condition property="jmolAppletGuide.uptodate">

      <and>

        <uptodate targetfile="build/doc/JmolAppletGuide.html">

                    includes="JmolAppletGuide.docbook.xml, applet/*.docbook.xml"/>

        </uptodate>

        <uptodate targetfile="build/doc/JmolAppletGuide_fr.html">

                    includes="JmolAppletGuide_fr.docbook.xml, applet/*_fr.docbook.xml"/>

        </uptodate>

        <uptodate targetfile="build/doc/JmolAppletGuide_de.html">

                    includes="JmolAppletGuide_de.docbook.xml"/>

        </uptodate>

      </and>

    </condition>

               classpath="${lib.dir}/${saxon.jar}"

               property="xsl.available"/>

    <uptodate property="javadoc.uptodate" targetfile="${javadoc.dir}/index.html">

      <srcfiles dir="src" includes="**/*.java, **/*.html" />

    </uptodate>

    <available file="${keystore.name}" property="keystore.present" />

    < !  - - Optional proxy settings (if defined) - -  >

               value="-Dhttp.proxyHost=${http.proxyHost}" >

      <not>

        <equals arg1="http.proxyHost" arg2="" />

      </not>

    </condition>

               value="-Dhttp.proxyPort=${http.proxyPort}" >

      <not>

        <equals arg1="http.proxyPort" arg2="" />

      </not>

    </condition>

  </target>

  -->

  <target id="classes" name="classes" depends="init">

    <mkdir dir="${classes.dir}"/>

           debug="${debug}" deprecation="${deprecation}"

           optimize="${optimization}" source="1.7" target="1.7">

      <classpath refid="project.class.path" />

      <exclude name="astex/**/*.java"/>

      <exclude name="java_cup/**/*.java"/>

    </javac>

    <copy todir="${classes.dir}" >

      <fileset dir="src">

        <include name="**/license.txt" />

        <include name="**/*.jpg" />

        <include name="**/*.gif" />

        <include name="**/*.po" />

      	<include name="**/*.png" />

        <include name="**/*.html" />

        <include name="**/*.js" />

        <include name="**/*.dtd" />

        <include name="**/*.properties" />

        <include name="**/Properties/*" />

             comment out the 2 lines above and uncomment the following 3 lines -->

        <include name="**/JmolPop*.properties" />

        <include name="**/Properties/Jmol.properties" />

        <include name="**/Properties/Jmol-resources.properties" />

        -->

        <include name="**/Data/*" />

        <include name="**/*.txt" />

        <include name="**/*.json" />

      </fileset>

    </copy>

    <copy file="Jmol.properties" tofile="${classes.dir}/org/jmol/viewer/Jmol.properties" />

  </target>

  <target name="applet-classes" id="applet-classes" depends="init">

    <mkdir dir="${applet.classes.dir}"/>

    <copy todir="${applet.classes.dir}" >

      <fileset dir="src">

        <include name="org/jmol/modelkit/images/*" />

      </fileset>

    </copy>

bh 20220215  changed to 1.7, 1.7

bh 20131124  changed to 1.6, 1.6

mth 20040713 ... with the Sun Java 1.5 compiler the default

         source code version is 1.5. And one cannot generate code for

         a 1.1 virtual machine from 1.5 source. Therefore, in order to

         compile for the 1.1 jvm, we need to specify that the source

         version is 1.3. (Note that we cannot use source=1.4 because

         of assertions)

miguel 20041121

I do not know recall exactly what I meant by the statement

in (parentheses) above. I *think* that what I was saying

is that if you say 'source=1.4' then one also cannot

generate code for a 1.1 jvm, because of the special

support for assertions (which were introduced in 1.4). 

bob 2010.02.01

changed    source="1.3" target="1.1"

     to    source="1.4" target="1.4"

bob 2010.04.29

in order to allow for faster BitSet methods

changed    source="1.4" target="1.4"

     to    source="1.5" target="1.5"

bob 2010.05.19

changed just the applet classes back to:

           source="1.4" target="1.4"

all support for previous versions removed

    <property name="build.compiler" value="javac1.7" />

           debug="${debug}" deprecation="${deprecation}"

           optimize="${optimization}"

           source="1.7" target="1.7" encoding="UTF8"

           includesfile="applet.classes"

           classpathref="applet-project.class.path" />

    <copy todir="${applet.classes.dir}" >

      <fileset dir="src">

        <include name="org/jmol/minimize/forcefield/data/*.txt" />

        <include name="jmol75x29x8.gif" />

      </fileset>

    </copy>

    <copy todir="${applet.classes.dir}" >

      <fileset dir="src">

        <include name="org/jmol/quantum/*.txt" />

      </fileset>

    </copy>

    <copy file="Jmol.properties" tofile="${applet.classes.dir}/org/jmol/viewer/Jmol.properties" />

    <copy todir="${applet.classes.dir}" >

      <fileset dir="${classes.dir}">

        <include name="**/JmolApplet/*/*.class" />

      </fileset>

      <fileset dir="src">

        <include name="**/license.txt" />

      </fileset>

    </copy>

  </target>

  <target name="apisio-classes" id="apisio-classes" depends="init">

    <mkdir dir="${apisio.classes.dir}"/>

           debug="${debug}" deprecation="${deprecation}"

           optimize="${optimization}" source="1.7" encoding="UTF8"

           includesfile="apisio.classes"

           classpathref="apisio-project.class.path" />

    <copy todir="${apisio.classes.dir}" >

      <fileset dir="src">

        <include name="**/g3d/*.html" />

      </fileset>

    </copy>

  </target>

  <target name="check.cdkjars" id="check.cdkjars">

    <condition property="cdkjars.uptodate">

      <and>

        <uptodate targetfile="${appjars.dir}/org/openscience/cdk">

          <srcfiles dir="${lib.dir}" includes="jmol2cdk.jar"/>

        </uptodate>

                  srcfile="${appjars.dir}/org/openscience/cdk"/>

      </and>

    </condition>

  </target>

  <target name="check.pluginjars" id="check.pluginjars">

    <condition property="pluginjars.uptodate">

      <and>

        <uptodate targetfile="${appjars.dir}/org/openscience/cdkplugin">

          <srcfiles dir="${plugin.dir}" includes="dirbrowser.jar"/>

          <srcfiles dir="${plugin.dir}" includes="dadmlbrowser.jar"/>

        </uptodate>

                  srcfile="${appjars.dir}/org/openscience/cdkplugin"/>

      </and>

    </condition>

  </target>

    -->

  	<target name="check.libjars" id="check.libjars">

    <condition property="libjars.uptodate">

      <and>

        <uptodate targetfile="${appjars.dir}">

          <srcfiles dir="${lib.dir}" includes="${naga.jar}"/>

          <srcfiles dir="${lib.dir}" includes="${commons-cli.jar}"/>

          <srcfiles dir="${lib.dir}" includes="${inchi.jar}"/>

        </uptodate>

                  srcfile="${appjars.dir}"/>

      </and>

    </condition>

  </target>

  <target name="cdkjars" id="cdkjars" depends="check.cdkjars" unless="cdkjars.uptodate">

    <delete file="build/cdkjars.timestamp"/>

    <mkdir dir="${appjars.dir}"/>

    <unjar dest="${appjars.dir}" src="${lib.dir}/jmol2cdk.jar"/>

    <touch file="build/cdkjars.timestamp"/>

  </target>

  <target name="pluginjars" id="pluginjars" depends="check.pluginjars" unless="pluginjars.uptodate">

    <delete file="build/pluginjars.timestamp"/>

    <mkdir dir="${appjars.dir}"/>

    <unjar dest="${appjars.dir}" src="${plugin.dir}/dirbrowser.jar"/>

    <unjar dest="${appjars.dir}" src="${plugin.dir}/dadmlbrowser.jar"/>

    <touch file="build/pluginjars.timestamp"/>

  </target -->

  <target name="libjars" id="libjars" depends="check.libjars" unless="libjars.uptodate">

    <delete file="build/libjars.timestamp"/>

    <mkdir dir="${appjars.dir}"/>

    <unjar dest="${appjars.dir}" src="${lib.dir}/${naga.jar}"/>

    <unjar dest="${appjars.dir}" src="${lib.dir}/${commons-cli.jar}"/>

  	<delete dir="${appjars.dir}/javajs" />

  	<delete dir="${appjars.dir}/org/jmol" />

  	<delete dir="${appjars.dir}/org/apache/tools" />

  	<delete dir="${appjars.dir}/META-INF" />

    <unjar dest="${appjars.dir}" src="${lib.dir}/${inchi.jar}"/>

  	<move file="${appjars.dir}/META-INF/LICENSE" tofile="${appjars.dir}/META-INF/LICENSE-JNI-INCHI"/>

  	<delete file="${appjars.dir}/META-INF/MANIFEST.MF" />

  	     despite the fact that the org/apache/logging package is not included in Jmol.

  	     It is added here in case JNI-InChI is ever upgraded to Log4J2 (which requires Java 7+) -->  

  	<delete file="${appjars.dir}/org/apache/logging/log4j/core/lookup/JndiLookup.class" />

    <touch file="build/libjars.timestamp"/>

  </target>

    	          depends="init,classes,jmolGuide,jmolHistory,jmolDevelopersGuide,libjars,main-i18n" -->

          depends="init,classes,libjars">

    <if><equals arg1="${Private.propertyFile}" arg2="nojar" />

    	<then><echo>Skipping jar creation</echo></then><else>

  	<copy todir="${classes.dir}/org/openscience/jmol/Data/guide" >

      <fileset dir="build/doc/JmolUserGuide">

        <include name="**/*.html" />

      </fileset>

    </copy>

    <copy todir="${classes.dir}/org/openscience/jmol/Data/guide_fr" >

      <fileset dir="build/doc/JmolUserGuide_fr">

        <include name="**/*.html" />

      </fileset>

    </copy>

    <copy todir="${classes.dir}/org/openscience/jmol/Data" >

      <fileset dir="build/doc/JmolHistory">

        <include name="**/*.html" />

      </fileset>

    </copy>

    	    <echo message="Creating Jmol.jar -- if this fails, check to see that build/Jmol.jar is not open." />

         manifest="manifest/application.txt">

      <fileset dir="${classes.dir}" >

        <exclude name="**/.*" />

        <exclude name="**/*.dx" />

        <exclude name="ant/**" />

        <include name="com/**" />

        <include name="net/sf/**" />

        <include name="javajs/api/**" />

        <include name="javajs/awt/**" />

        <include name="javajs/export/**" />

        <include name="javajs/img/**" />

        <include name="javajs/util/**" />

        <include name="jme/**" />

        <include name="**/jspecview/**" />

        <include name="**/org/gennbo/**" />

        <include name="**/org/apache/**" />

        <include name="**/org/qcschema/**" />

        <include name="**/jmol/**" />

        <exclude name="**/Test*.class" />

        <exclude name="**/jmol/jcamp/**" />

        <exclude name="**/jmol/applet/*" />

        <exclude name="**/app/JmolData.class" />

      </fileset>

      <fileset dir="${appjars.dir}" includes="**/*"/>

    </jar>

    <antcall target="sign-jar-file">

      <param name="sign-jar-file-dir" value="build" />

      <param name="sign-jar-file-name"  value="Jmol.jar" />

    </antcall>

    	    <echo message="Creating JmolData.jar -- if this fails, check to see that build/Jmol.jar is not open." />

         manifest="manifest/applicationData.txt">

      <fileset dir="${classes.dir}" >

        <exclude name="**/Test*.class" />

        <exclude name="**/jmol/jcamp/**" />

        <exclude name="**/jmol/applet/*" /> 

        <exclude name="**/.*" />

        <exclude name="**/*.dx" />

        <exclude name="**/Test*.class" />

        <exclude name="ant/**" />

        <exclude name="com/**" />

        <include name="net/sf/**" />

        <include name="javajs/api/**" />

        <include name="javajs/awt/**" />

        <include name="javajs/export/**" />

        <include name="javajs/img/**" />

        <include name="javajs/util/**" />

        <include name="**/jspecview/**" />

        <include name="**/org/gennbo/**" />

        <include name="**/org/apache/**" />

        <include name="**/org/qcschema/**" />

        <include name="**/jmol/**" />

        <exclude name="**/jmol/_documents/**" />

        <exclude name="**/jmol/applet/**" />

        <exclude name="**/jmol/*js/**" />

        <exclude name="**/jmol/console/**" />

        <exclude name="**/jmol/popup/**" />

        <exclude name="org/jmol/util/BitSet32.class" />

        <exclude name="**/openscience/jmol/Data/**" />

        <exclude name="**/openscience/jmol/app/Jmol.class" />

        <exclude name="**/openscience/jmol/app/images/**" />

        <exclude name="**/openscience/jmol/app/jmolpanel/**" />

        <exclude name="**/openscience/jmol/app/webexport/**" />

      </fileset>

      <fileset dir="${appjars.dir}" includes="**/*"/>

    </jar>

    <antcall target="sign-jar-file">

      <param name="sign-jar-file-dir" value="build" />

      <param name="sign-jar-file-name"  value="JmolData.jar" />

    </antcall>

    <copy todir="build">

      <fileset dir=".">

        <include name="jmol" />

        <include name="jmol.bat" />

        <include name="jmol.sh" />

      </fileset>

    </copy>

         manifest="manifest/jvxl.txt">

      <fileset dir="${classes.dir}" >

        <exclude name="**/.*" />

        <exclude name="**/*.dx" />

        <exclude name="**/Test*.class" />

        <include name="org/openscience/jvxl/*" />

        <include name="org/jmol/api/**" />

        <include name="org/jmol/atomdata/**" />