From 935322f8bb097a28c8074108dda4afbd5e08f1f6 Mon Sep 17 00:00:00 2001 From: Miro Hrončok Date: Mar 30 2020 11:51:04 +0000 Subject: Orphaned for 6+ weeks --- diff --git a/.gitignore b/.gitignore deleted file mode 100644 index ec42e07..0000000 --- a/.gitignore +++ /dev/null @@ -1,17 +0,0 @@ -jmol-11.8.25-full.tar.gz -Jmol_icon_128.png -jmol-11.8.26-full.tar.gz -/Jmol-12.0.41-full.tar.gz -/Jmol-12.0.48-full.tar.gz -/Jmol-13.0.15-full.tar.gz -/Jmol-13.2.3-full.tar.gz -/Jmol-13.2.4-full.tar.gz -/Jmol_icon13.png -/Jmol-14.0.3-full.tar.gz -/Jmol-14.0.4-full.tar.gz -/Jmol-14.0.7-full.tar.gz -/Jmol-14.0.11-full.tar.gz -/Jmol-14.0.13-full.tar.gz -/Jmol-14.2.12_2015.01.22-full.tar.gz -/Jmol-14.2.15_2015.07.09-full.tar.gz -/Jmol-14.4.0_2015.10.13-full.tar.gz diff --git a/dead.package b/dead.package new file mode 100644 index 0000000..5204a84 --- /dev/null +++ b/dead.package @@ -0,0 +1 @@ +Orphaned for 6+ weeks diff --git a/jmol-14.0.11-dontsign.patch b/jmol-14.0.11-dontsign.patch deleted file mode 100644 index 7ffc38c..0000000 --- a/jmol-14.0.11-dontsign.patch +++ /dev/null @@ -1,64 +0,0 @@ -diff -up jmol-14.0.11/build.xml.nosign jmol-14.0.11/build.xml ---- jmol-14.0.11/build.xml.nosign 2014-03-13 15:38:16.844657823 +0200 -+++ jmol-14.0.11/build.xml 2014-03-13 15:39:05.449390862 +0200 -@@ -153,7 +153,7 @@ Bob Hanson hansonr@stolaf.edu 11/26/2013 - - - -- -+ - - - -@@ -515,10 +515,10 @@ all support for previous versions remove - - - -- -+ - - -@@ -549,10 +549,10 @@ all support for previous versions remove - - - -- -+ - - - -@@ -581,10 +581,10 @@ all support for previous versions remove - - - -- -+ - - - - diff --git a/jmol-14.2.12-fedorabuild.patch b/jmol-14.2.12-fedorabuild.patch deleted file mode 100644 index 2f0e0e4..0000000 --- a/jmol-14.2.12-fedorabuild.patch +++ /dev/null @@ -1,72 +0,0 @@ -diff -up jmol-14.2.12_2015.01.22/build.xml.fedorabuild jmol-14.2.12_2015.01.22/build.xml ---- jmol-14.2.12_2015.01.22/build.xml.fedorabuild 2015-01-23 05:14:29.000000000 +0100 -+++ jmol-14.2.12_2015.01.22/build.xml 2015-02-02 23:48:08.698051895 +0100 -@@ -64,7 +64,7 @@ Bob Hanson hansonr@stolaf.edu 11/26/2013 - - - -- -+ - - -@@ -97,13 +97,13 @@ Bob Hanson hansonr@stolaf.edu 11/26/2013 - - - -- -+ - - - using ${Private.keystore} ${Private.storetype} - - -- -+ - - - -@@ -115,8 +115,8 @@ Bob Hanson hansonr@stolaf.edu 11/26/2013 - - - -- -- -+ -+ - - - -@@ -436,7 +436,8 @@ all support for previous versions remove - - - -- -+ -+ - - -@@ -467,9 +468,9 @@ all support for previous versions remove - - - -- -- -- -+ -+ - - - -@@ -1226,7 +1227,8 @@ all support for previous versions remove - - - -- -+ -+ - - - diff --git a/jmol.spec b/jmol.spec deleted file mode 100644 index db28eb9..0000000 --- a/jmol.spec +++ /dev/null @@ -1,385 +0,0 @@ -%global pkgdate 2016.06.30 -# Build jsmol by default -%bcond_without jsmol - -Name: jmol -Version: 14.6.0 -Release: 8.%{pkgdate}%{?dist} -Summary: An open-source Java viewer for chemical structures in 3D -# most is LGPLv2+, src/com/obrador is combination of IJG and BSD -# src/org@/jmol/export/image is partially 2 clause BSD -License: LGPLv2+ and IJG and BSD -URL: http://jmol.sourceforge.net -BuildArch: noarch -Source0: http://downloads.sourceforge.net/%{name}/Jmol-%{version}_%{pkgdate}-full.tar.gz -Source1: http://wiki.jmol.org/images/1/1c/Jmol_icon13.png -# Patch to get Jmol to build in Fedora (location of JAR files) -Patch0: jmol-14.2.12-fedorabuild.patch -# Don't try to sign jars -Patch1: jmol-14.0.11-dontsign.patch - - -BuildRequires: ant, ant-contrib -BuildRequires: desktop-file-utils -BuildRequires: gettext-devel -BuildRequires: apache-commons-cli -BuildRequires: java-devel >= 1:1.6.0 -BuildRequires: jpackage-utils -BuildRequires: jspecview >= 2-6.1464svn -BuildRequires: naga -# In newer releases some of the necessary Java classes are -# in the browser plugin package -BuildRequires: icedtea-web -Requires: icedtea-web -Requires: java >= 1:1.6.0 -Requires: jpackage-utils -Requires: apache-commons-cli -Requires: jspecview >= 2-6.1464svn -Requires: naga - -%description -Jmol is a free, open source molecule viewer for students, educators, -and researchers in chemistry and biochemistry. - -%if %{with jsmol} -%package -n jsmol -Summary: JavaScript-Based Molecular Viewer From Jmol -Requires: %{name} = %{version}-%{release} -BuildRequires: web-assets-devel -Requires: web-assets-filesystem - -%description -n jsmol -JSmol is the extension of the Java-based molecular visualization -applet Jmol (jmol.sourceforge.net) as an HTML5 JavaScript-only -web app. It can be used in conjunction with the Java applet to -provide an alternative to Java when the platform does not support -that (iPhone/iPad) or does not support applets (Android). Used in -conjunction with the Jmol JavaScript Object -(http://wiki.jmol.org/index.php/Jmol_Javascript_Object ), JSmol -seamlessly offers alternatives to Java on these non-Applet platforms. - -JSmol can read all the files that Jmol reads. You can do all the -scripting that Jmol does. You can create all the buttons and links -and such that you are used to creating for Jmol. All of the rendering -capability of the Jmol applet is there. JSmol has both a console and -a popup menu. - -JSmol is integrated fully with JSME and JSpecView. - -A "lite" version of JSmol provides minimal functionality -(balls and sticks only) for extremely small-bandwith apps. -%endif - -%package javadoc -Summary: Java docs for %{name} -Requires: %{name} = %{version}-%{release} -Requires: jpackage-utils - -%description javadoc -This package contains the API documentation for %{name}. - - -%package doc -Summary: Documentation for %{name} -Requires: %{name} = %{version}-%{release} - -%description doc -The documentation for %{name}. - - -%prep -%setup -q -n %{name}-%{version}_%{pkgdate} -%patch0 -p1 -b .fedorabuild -%patch1 -p1 -b .nosign - -# Remove binaries -find -name '*.class' -exec rm -f '{}' \; -find -name '*.exe' -exec rm -f '{}' \; -find -name '*.jar' -exec rm -f '{}' \; -rm -f jars/* - -# Remove executable permissions from documentation -find -name "*.txt" -exec chmod 644 {} \; -# Fix EOL encoding -for doc in README.txt COPYRIGHT.txt LICENSE.txt CHANGES.txt; do -sed "s|\r||g" $doc > $doc.new && \ -touch -r $doc $doc.new && \ -mv $doc.new $doc -done - - -# Make desktop file -cat > jmol.desktop << EOF -[Desktop Entry] -Encoding=UTF-8 -Name=Jmol -Comment=An open-source Java viewer for chemical structures in 3D -Exec=jmol -Icon=jmol -Terminal=false -Type=Application -Categories=Education;Science;Chemistry;Physics;DataVisualization; -EOF - -%build -export ANT_OPTS="-Dfile.encoding=utf-8" -# Need to be able to find netscape.javascript.*classes -%if 0%{?fedora} > 25 -PLUGIN_JAR=%{_datadir}/icedtea-web/jsobject.jar -%else -PLUGIN_JAR=%{_datadir}/icedtea-web/plugin.jar -%endif -unzip $PLUGIN_JAR | grep javascript/JSObject.class -ant --execdebug -lib $PLUGIN_JAR jar applet-jar doc - -%install -rm -rf %{buildroot} -install -D -p -m 644 build/Jmol.jar %{buildroot}%{_javadir}/Jmol.jar -install -D -p -m 644 build/JmolApplet.jar %{buildroot}%{_javadir}/JmolApplet.jar -install -D -p -m 644 %{SOURCE1} %{buildroot}%{_datadir}/pixmaps/%{name}.png - -%jpackage_script org.openscience.jmol.app.Jmol "" "" Jmol:commons-cli:jspecview.app:jspecview.applet jmol true - -# Install desktop file -desktop-file-install --dir=${RPM_BUILD_ROOT}%{_datadir}/applications jmol.desktop - -# Javadoc files -mkdir -p %{buildroot}%{_javadocdir}/%{name} -cp -rp build/javadoc/* %{buildroot}%{_javadocdir}/%{name} - -%if %{with jsmol} -pushd appletweb - unzip jsmol.zip - pushd jsmol - mkdir -p %{buildroot}%{_jsdir}/jsmol - cp -pr *.htm *.js j2s js %{buildroot}%{_jsdir}/jsmol - popd -popd -%endif - -%files -%doc build/doc/* README.txt COPYRIGHT.txt LICENSE.txt ChangeLog.html CHANGES.txt -%{_bindir}/%{name} -%{_javadir}/Jmol.jar -%{_javadir}/JmolApplet.jar -%{_datadir}/pixmaps/%{name}.png -%{_datadir}/applications/%{name}.desktop - -%if %{with jsmol} -%files -n jsmol -%{_jsdir}/jsmol -%endif - -%files javadoc -%{_javadocdir}/%{name}/ - -%files doc -%doc build/doc/* - -%changelog -* Wed Jan 29 2020 Fedora Release Engineering - 14.6.0-8.2016.06.30 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild - -* Thu Jul 25 2019 Fedora Release Engineering - 14.6.0-7.2016.06.30 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Fri Feb 01 2019 Fedora Release Engineering - 14.6.0-6.2016.06.30 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Fri Jul 13 2018 Fedora Release Engineering - 14.6.0-5.2016.06.30 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild - -* Wed Feb 07 2018 Fedora Release Engineering - 14.6.0-4.2016.06.30 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild - -* Wed Jul 26 2017 Fedora Release Engineering - 14.6.0-3.2016.06.30 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild - -* Wed Feb 22 2017 Susi Lehtola - 14.6.0-3.2016.06.30 -- Fix FTBFS in rawhide. - -* Fri Feb 10 2017 Fedora Release Engineering - 14.6.0-2.2016.06.30 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild - -* Fri Jul 08 2016 Susi Lehtola - 14.6.0-1.2016.06.30 -- Update to 14.6.0 snapshot 2016.06.30. - -* Thu Feb 04 2016 Fedora Release Engineering - 14.4.0-2.2015.10.13 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild - -* Wed Oct 14 2015 Susi Lehtola - 14.4.0-1.2015.10.13 -- Update to 14.4.0 snapshot 2015.10.13. - -* Mon Sep 21 2015 Susi Lehtola - 14.2.15-1.2015.07.09 -- Update to 14.2.15 snapshot 2015.07.09. - -* Wed Jun 17 2015 Fedora Release Engineering - 14.2.12-3.2015.01.22 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Sat Feb 07 2015 pcpa - 14.2.12-2.2015.01.22 -- Create jsmol subpackage (#1190356) - -* Mon Feb 02 2015 Susi Lehtola - 14.2.12-1.2015.01.22 -- Update to 14.2.12 snapshot 2015.01.22. - -* Sun Jun 08 2014 Fedora Release Engineering - 14.0.13-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild - -* Wed May 07 2014 Susi Lehtola - 14.0.13-2 -- Don't bundle external libraries (BZ #1095315). - -* Thu Apr 03 2014 Susi Lehtola - 14.0.13-1 -- Need full java because this is a GUI application. -- Update to 14.0.13. - -* Fri Mar 28 2014 Michael Simacek - 14.0.11-2 -- Use Requires: java-headless rebuild (#1067528) - -* Thu Mar 13 2014 Susi Lehtola - 14.0.11-1 -- Update to 14.0.11. - -* Wed Feb 12 2014 Susi Lehtola - 14.0.7-1 -- Added missing Requires: jspecview (BZ #1064335). -- Update to 14.0.7. - -* Tue Jan 07 2014 Susi Lehtola - 14.0.3-1 -- Update to 14.0.4. - -* Wed Jan 01 2014 Susi Lehtola - 14.0.3-1 -- Update to 14.0.3. -- Updated logo. - -* Fri Aug 23 2013 Susi Lehtola - 13.2.4-1 -- Update to 13.2.4. - -* Sat Aug 10 2013 Susi Lehtola - 13.2.3-1 -- Update to 13.2.3. - -* Sat Aug 03 2013 Fedora Release Engineering - 13.0.15-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild - -* Tue May 14 2013 Susi Lehtola - 13.0.15-1 -- Update to 13.0.15. - -* Wed Mar 6 2013 Toshio Kuratomi - 12.0.48-10 -- Remove vendor prefix from desktop files in F19+ https://fedorahosted.org/fesco/ticket/1077 - -* Thu Feb 14 2013 Fedora Release Engineering - 12.0.48-9 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild - -* Thu Jul 19 2012 Fedora Release Engineering - 12.0.48-8 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild - -* Wed May 9 2012 Jussi Lehtola - 12.0.48-7 -- Remove exe file in %%prep. - -* Mon May 7 2012 Stanislav Ochotnicky - 12.0.48-6 -- Add forgotten apache-commons BR/R - -* Mon May 7 2012 Stanislav Ochotnicky - 12.0.48-5 -- Unbundle bundled libraries -- Fix javadoc encoding build problem -- Start using jpackage_script macro -- Fix up license tag somewhat - -* Fri Jan 13 2012 Fedora Release Engineering - 12.0.48-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild - -* Wed Aug 24 2011 Jussi Lehtola - 12.0.48-3 -- Really fix build by not ignoring system classpath (thanks to omajid). - -* Wed Aug 17 2011 Jussi Lehtola - 12.0.48-2 -- Try to fix build on rawhide and F16 by adding CLASSPATH definition. - -* Wed Aug 17 2011 Jussi Lehtola - 12.0.48-1 -- Update to 12.0.48. - -* Thu Apr 28 2011 Jussi Lehtola - 12.0.41-1 -- Update to 12.0.41. - -* Wed Feb 09 2011 Fedora Release Engineering - 11.8.26-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild - -* Fri Aug 6 2010 Jussi Lehtola - 11.8.26-1 -- Update to 11.8.26. - -* Sat Jul 24 2010 Jussi Lehtola - 11.8.25-1 -- Update to 11.8.25. - -* Tue May 18 2010 Jussi Lehtola - 11.8.24-1 -- Update to 11.8.24. - -* Sun Apr 25 2010 Jussi Lehtola - 11.8.23-1 -- Update to 11.8.23. - -* Fri Mar 26 2010 Jussi Lehtola - 11.8.22-1 -- Update to 11.8.22. - -* Tue Mar 23 2010 Jussi Lehtola - 11.8.21-1 -- Update to 11.8.21. - -* Thu Mar 11 2010 Jussi Lehtola - 11.8.20-1 -- Update to 11.8.20. - -* Fri Mar 05 2010 Jussi Lehtola - 11.8.19-1 -- Update to 11.8.19. - -* Sat Feb 06 2010 Jussi Lehtola - 11.8.18-1 -- Update to 11.8.18. - -* Sat Jan 16 2010 Jussi Lehtola - 11.8.17-1 -- Update to 11.8.17. - -* Thu Jan 14 2010 Jussi Lehtola - 11.8.16-1 -- Update to 11.8.16. - -* Tue Jan 05 2010 Jussi Lehtola - 11.8.15-1 -- Update to 11.8.15. - -* Wed Dec 23 2009 Jussi Lehtola - 11.8.14-1 -- Build from stable release tarballs works now, switch to using stable -releases. -- Update to 11.8.14. - -* Fri Oct 02 2009 Jussi Lehtola - 11.8-1.11581 -- Switch back to tar.bz2 source since xz doesn't work in EL-5. -- Update to svn revision 11581. - -* Tue Sep 22 2009 Jussi Lehtola - 11.8-1.11564 -- Update to 11.8 series, svn revision 11564. - -* Fri Jul 24 2009 Fedora Release Engineering - 11.6-12.11223svn -- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild - -* Thu Jul 16 2009 Jussi Lehtola - 11.6-11.11223svn -- Include desktop file in the spec. - -* Thu Jul 16 2009 Jussi Lehtola - 11.6-10.11223svn -- Bump release to be able to rebuild in koji. - -* Thu Jul 16 2009 Jussi Lehtola - 11.6-9.11223svn -- Update to svn revision 11223. - -* Wed Feb 25 2009 Fedora Release Engineering - 11.6-8.10506svn -- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild - -* Thu Dec 18 2008 Jussi Lehtola - 11.6-7.10506svn -- Remove jpackage-utils from the Requires of the documentation packages. - -* Fri Oct 24 2008 Jussi Lehtola - 11.6-6.10137svn -- Fix build on EPEL 5. - -* Fri Oct 24 2008 Jussi Lehtola - 11.6-5.10137svn -- Disable JAR signing. - -* Fri Oct 24 2008 Jussi Lehtola - 11.6-4.10137svn -- Add gettext-devel to BR and fix desktop-file-install. - -* Thu Oct 23 2008 Jussi Lehtola - 11.6-3.10137svn -- Update to svn revision 10137. - -* Tue Oct 14 2008 Jussi Lehtola - 11.6-2.10081svn -- Review fixes. - -* Mon Oct 13 2008 Jussi Lehtola - 11.6-1.10081svn -- First release. diff --git a/sources b/sources deleted file mode 100644 index 212f60e..0000000 --- a/sources +++ /dev/null @@ -1,2 +0,0 @@ -bbeac27592fb2fb9c6d4862e83bb1163 Jmol-14.6.0_2016.06.30-full.tar.gz -ec81d40b7583cf4fd9dfac71b84784cd Jmol_icon13.png