From 851198b1093d7fa1ca65650da57fc3f9ecbd570f Mon Sep 17 00:00:00 2001
From: Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl>
Date: Dec 06 2023 22:08:24 +0000
Subject: Version 5.20.2


... (rhbz#2252916)

---

diff --git a/libsbml.spec b/libsbml.spec
index 23ace6f..e7e17d9 100644
--- a/libsbml.spec
+++ b/libsbml.spec
@@ -34,13 +34,12 @@ Obsoletes:      libsbml-sharp < 0:5.18.0-20
 %global _docdir_fmt %{name}
 
 Name:           libsbml
-Version:        5.19.0
+Version:        5.20.2
 Release:        %autorelease
 Summary:        Systems Biology Markup Language library
 License:        LGPL-2.1-or-later
 URL:            https://sbml.org/Software/libSBML
-Source0:        https://sourceforge.net/projects/sbml/files/%{name}/%{version}/stable/libSBML-%{version}-core-plus-packages-src.tar.gz
-Source1:        https://sourceforge.net/projects/sbml/files/%{name}/%{version}/stable/libSBML-%{version}-render-src.zip
+Source:         https://github.com/sbmlteam/libsbml/archive/v%{version_no_tilde}/%{name}-%{version_no_tilde}.tar.gz
 
 # https://bugzilla.redhat.com/show_bug.cgi?id=1632190
 Patch0:         %{name}-use-system-minizip-cmake.patch
@@ -211,34 +210,35 @@ This package contains %{summary}.
 %endif
 
 %prep
-%autosetup -n libSBML-%{version}-Source -p1
-unzip -n %{SOURCE1}
-
-sed -r -i s/DOXYGEN_MAX_VERSION=1.8.11/DOXYGEN_MAX_VERSION=2.0.0/ configure
+%autosetup -p1
 
 %if %{with python}
-find . -type f -name '*.py' -exec %{__python3} %{_rpmconfigdir}/redhat/pathfix.py -pn -i "%{__python3}"  {} \;
-python3 -m lib2to3 -f print -w docs/src/filters/
-python3 -m lib2to3 -f next -w docs
+find . -type f -name '*.py' -exec %{python3} %{_rpmconfigdir}/redhat/pathfix.py -pn -i "%{python3}"  {} \;
 %endif
 
-grep -e 'This file was automatically generated by SWIG' -r . -l|xargs rm
+grep -e 'This file was automatically generated by SWIG' -r -l . | xargs --no-run-if-empty rm -v
 
 %if %{with doc}
 mkdir build-docs
 cp -a $(ls -1|grep -v build-docs) build-docs/
 %endif
 
+sed -r -i 's|(set\(PERL_PACKAGE_INSTALL_DIR.*/perl5)/site_perl.*\)|\1/vendor_perl)|' src/bindings/perl/CMakeLists.txt
+sed -r -i 's|(set\(RUBY_PACKAGE_INSTALL_DIR.*/ruby)/site_ruby.*\)|\1/vendor_ruby)|' src/bindings/ruby/CMakeLists.txt
+
 %build
 mkdir -p build
-%{set_build_flags}
+
+# silence some warnings which are only relevant to upstream developers
+export CXXFLAGS="$CXXFLAGS -Wno-overloaded-virtual -Wno-unused-variable -Wno-unused-but-set-variable -Wno-switch"
+
 %cmake3 -B build -DENABLE_{LAYOUT,QUAL,COMP,FBC,RENDER,GROUPS,MULTI}=ON \
        -DCSHARP_COMPILER:FILEPATH=%{_bindir}/mcs \
 %if %{with python}
        -DWITH_PYTHON:BOOL=ON \
        -DPYTHON_INCLUDE_DIR:PATH=%{_includedir}/python%{python3_version}$(python3-config --abiflags) \
        -DPYTHON_LIBRARY:FILEPATH=%{_libdir}/libpython%{python3_version}$(python3-config --abiflags).so \
-       -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \
+       -DPYTHON_EXECUTABLE:FILEPATH=%{python3} \
        -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON \
 %endif
 %if %{with perl}
@@ -297,7 +297,7 @@ pushd build-docs
            --with-doxygen \
 %endif
 %if %{with python}
-           --with-python --with-python-interpreter=%{__python3} \
+           --with-python --with-python-interpreter=%{python3} \
 %endif
            --enable-layout --enable-comp --enable-fbc --enable-qual
 
@@ -339,6 +339,9 @@ mv %{buildroot}%{_pkgdocdir}-%{version} %{buildroot}%{_pkgdocdir}
 install -Dm0644 src/bindings/ruby/README.txt %{buildroot}%{_pkgdocdir}/README-ruby.txt
 %endif
 
+# WTF?
+rm -fv %buildroot/%{_datadir}/cmake/Modules/Find{BZ2,LIBXML,ZLIB}.cmake
+
 %if %{with check}
 %check
 pushd build
@@ -361,6 +364,7 @@ popd
 %{_libdir}/*.so
 %{_libdir}/libsbml-static.a
 %{_libdir}/cmake/sbml-*.cmake
+%{_datadir}/cmake/Modules/FindLIBSBML.cmake
 %{_libdir}/pkgconfig/%{name}.pc
 
 %if %{with python}