# Polymake intentionally leaves symbols undefined in the plugins, but Fedora's
# hardening flags disable RTLD_LAZY, resulting in undefined symbol errors while
# building the documentation.
%undefine _hardened_build
# If a library used by both polymake and Singular is updated, neither can be
# rebuilt, because each BRs the other and both are linked against the old
# version of the library. Use this to rebuild polymake without Singular
# support, rebuild Singular, then build polymake again with Singular support.
%bcond_without singular
# Date of the "perpetual beta" git snapshot
%global gitdate 20141013
%global gittag 10d8dab96e07470a9748440c595e17cdbdb13bff
%global shorttag %(cut -b -7 <<< %{gittag})
Name: polymake
Version: 2.13
Release: 22%{?gitdate:.git%{gitdate}}%{?dist}
Summary: Algorithms on convex polytopes and polyhedra
License: GPLv2+
URL: http://polymake.org/
#Source0: http://polymake.org/lib/exe/fetch.php/download/%{name}-%{version}.tar.bz2
Source0: https://github.com/%{name}/%{name}/tarball/%{gittag}/%{name}-%{name}-%{shorttag}.tar.gz
# Man page written by Jerry James from text found in the sources. Therefore,
# the copyright and license are the same as for the sources.
Source1: %{name}.1
# Fake libsingular-config file to fool the configuration scripts.
Source2: libsingular-config
# This patch will not be sent upstream, since it is Fedora-specific. Link
# against existing system libraries instead of building them from source,
# and do not use -rpath.
Patch0: %{name}-fedora.patch
# This patch was sent upstream 20 Mar 2013. Fix a call to an lrslib function
# that segfaults when given a NULL argument.
Patch1: %{name}-lrslib.patch
# Avoid -Werror=format-security failures.
Patch2: %{name}-format.patch
# Fedora-specific patch. Upstream code is written for Singular-3-1-7, but we
# have Singular-3-1-6. This patch adapts to the older Singular.
Patch3: %{name}-singular.patch
# Fix template gaffes in the libnormaliz interface code
Patch4: %{name}-libnormaliz.patch
# Fix a crash on exit
Patch5: %{name}-exit.patch
# Adapt to gcc 5.0
Patch6: %{name}-gcc5.patch
BuildRequires: bliss-devel
BuildRequires: boost-devel
BuildRequires: cddlib-devel
BuildRequires: cmake
BuildRequires: eigen3-static
BuildRequires: libnormaliz-devel
BuildRequires: libxml2-devel
BuildRequires: lrslib-devel
BuildRequires: mpfr-devel
BuildRequires: perl(ExtUtils::MakeMaker)
BuildRequires: perl(Term::ReadLine::Gnu)
BuildRequires: perl(XML::LibXSLT)
BuildRequires: perl(XML::SAX::Base)
BuildRequires: perl(XML::Writer)
BuildRequires: ppl-devel
BuildRequires: sympol-devel
BuildRequires: xhtml1-dtds
%if %{with singular}
BuildRequires: Singular-devel
%endif
Requires: perl(:MODULE_COMPAT_%{perl_version})
Requires: perl = 4:%{perl_version}
Requires: perl(Term::ReadLine::Gnu)
%global sover %(echo %{version} | cut -d. -f1-2)
%global major %(echo %{version} | cut -d. -f1)
%global polydir %{_libdir}/%{name}
# Don't expose private perl interfaces
%global __provides_exclude perl\\\(Geomview.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(Graphviz.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(Metapost.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(PerlIO.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(Postscript.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(Povray.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(Sketch.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(SplitsTree.*\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(application\\\)
%global __provides_exclude %{__provides_exclude}|perl\\\(_.*\\\)
# Exclude private perl interfaces that we don't Provide
%global __requires_exclude perl\\\(it\\\)
%global __requires_exclude %{__requires_exclude}|perl\\\(Polymake::Background\\\)
%global __requires_exclude %{__requires_exclude}|perl\\\(Polymake::Core::RuleFilter\\\)
%global __requires_exclude %{__requires_exclude}|perl\\\(Polymake::file_utils\.pl\\\)
%global __requires_exclude %{__requires_exclude}|perl\\\(Polymake::Namespaces\\\)
%global __requires_exclude %{__requires_exclude}|perl\\\(Polymake::regex\.pl\\\)
%global __requires_exclude %{__requires_exclude}|perl\\\(Polymake::utils\.pl\\\)
%description
Polymake is a tool to study the combinatorics and the geometry of convex
polytopes and polyhedra. It is also capable of dealing with simplicial
complexes, matroids, polyhedral fans, graphs, tropical objects, and so
forth.
Polymake can use various computational packages if they are installed.
Those available from Fedora are: 4ti2, azove, gfan, latte-integrale,
normaliz, ocaml-tplib-tools, qhull, Singular, TOPCOM, and vinci.
Polymake can interface with various visualization packages if they are
installed. Install one or more of the tools from the following list:
evince, geomview, graphviz, gv, and okular.
%if %{with singular}
%package singular
Summary: Plugin to access Singular from polymake
Requires: %{name}%{?_isa} = %{version}-%{release}
%description singular
This package contains a polymake plugin that provides access to
Singular.
%endif
%package devel
Summary: Development files for %{name}
Requires: %{name}%{?_isa} = %{version}-%{release}
%description devel
This package contains header files and libraries for developing
plugins (applications) that use %{name}.
%package doc
Summary: Documentation for %{name}
Requires: %{name}%{?_isa} = %{version}-%{release}
%description doc
This package contains documentation for %{name}.
%prep
%setup -q -n %{name}-%{name}-%{shorttag}
%patch0
%patch1
%patch2
%patch3
%patch4
%patch5
%patch6
fixtimestamp() {
touch -r $1.orig $1
rm -f $1.orig
}
# Make sure we don't build against the bundled libraries.
rm -fr external/{cdd,lrs}
# Adapt to a newer version of sympol
sed -i.orig "s|yal/||;s|symmetrygroupconstruction/||" \
bundled/group/apps/polytope/src/sympol_interface.cc
fixtimestamp bundled/group/apps/polytope/src/sympol_interface.cc
# Adapt to lrslib 050
sed -i.orig '/lrs_mp_close/d' bundled/group/external/sympol/sympol/raycomputationlrs.cpp
fixtimestamp bundled/group/external/sympol/sympol/raycomputationlrs.cpp
# Adapt to the way the Fedora Singular package is assembled
%if %{with singular}
mkdir bin
cp -p %{SOURCE2} bin
sed -i 's,$singularprefix/lib/libSingular,%{_libdir}/libsingular,' \
bundled/singular/configure.pl
%endif
# Turn off hardening flags derived from perl::Config. See above.
sed -e '/^\$LDsharedFlags=/a$LDsharedFlags =~ s/ -specs=\\S+//g;' \
-i support/configure.pl
%build
export CFLAGS="%{optflags} -I%{_includedir}/eigen3 -Wno-unused-local-typedefs"
export CXXFLAGS="$CFLAGS"
export LDFLAGS="$RPM_LD_FLAGS -Wl,--as-needed -ldl"
export Arch=%{_arch}
# NOT an autoconf-generated configure script; do not use %%configure.
./configure --build=%{_arch} --prefix=%{_prefix} --libdir=%{_libdir} \
%if %{with singular}
--with-singular=$PWD \
%endif
--libexecdir=%{polydir} --without-java --without-javaview
make %{?_smp_mflags} all
# Help the debuginfo generator find generated files
cd build.%{_arch}
cp -p perlx-*linux-*/CPlusPlus.xxs lib/core/CPlusPlus.xxs
cp -p perlx-*linux-*/CPlusPlus.cc lib/core/CPlusPlus.cc
%install
# Don't recompile the main library with DESTDIR compiled in
sed -i "/conf\.make/d" support/corelib.make
# The release-docs target copies docs to their installed locations
export Arch=%{_arch}
make install release-docs DESTDIR=%{buildroot}
# Install the man page
mkdir -p %{buildroot}%{_mandir}/man1
sed "s/@VERSION@/%{version}/" %{SOURCE1} > %{buildroot}%{_mandir}/man1/%{name}.1
touch -r %{SOURCE1} %{buildroot}%{_mandir}/man1/%{name}.1
# We don't want the documentation in /usr/share/polymake
mv %{buildroot}%{_datadir}/%{name}/doc .
# Remove stuff that shouldn't be installed
rm -fr %{buildroot}%{_datadir}/%{name}/apps/*/src \
%{buildroot}%{_datadir}/%{name}/java_build \
%{buildroot}%{polydir}/perlx/*/*/auto/Polymake/Ext/{.packlist,Ext.bs} \
%{buildroot}%{polydir}/lib/jreality
# Fix permissions
chmod 0755 %{buildroot}%{_bindir}/*
chmod 0755 %{buildroot}%{_libdir}/lib*
find %{buildroot}%{polydir} -name \*.so | xargs chmod 0755
# Remove the buildroot from configuration files
sed -i 's,%{buildroot},,' %{buildroot}%{polydir}/bundled/bliss/conf.make
sed -i 's,%{buildroot},,' %{buildroot}%{polydir}/bundled/group/conf.make
sed -i 's,%{buildroot},,' %{buildroot}%{polydir}/bundled/libnormaliz/conf.make
sed -i 's,%{buildroot},,' %{buildroot}%{polydir}/bundled/ppl/conf.make
%if %{with singular}
sed -i 's,%{buildroot},,' %{buildroot}%{polydir}/bundled/singular/conf.make
%endif
%post -p /sbin/ldconfig
%postun -p /sbin/ldconfig
%files
%{_bindir}/%{name}
%{_mandir}/man1/%{name}.1*
%{_libdir}/lib%{name}*.so.*
%{polydir}/
%if %{with singular}
%exclude %{polydir}/bundled/singular/
%endif
%{_datadir}/%{name}/
%exclude %{_datadir}/%{name}/lib/
%if %{with singular}
%files singular
%{polydir}/bundled/singular/
%endif
%files devel
%{_bindir}/%{name}-config
%{_includedir}/%{name}/
%{_datadir}/%{name}/lib/
%{_libdir}/lib%{name}*.so
%files doc
%doc doc/*
%changelog
* Mon May 18 2015 Jerry James <loganjerry@gmail.com> - 2.13-22.git20141013
- Rebuild for cddlib 094h
* Sat May 02 2015 Kalev Lember <kalevlember@gmail.com> - 2.13-21.git20141013
- Rebuilt for GCC 5 C++11 ABI change
* Sat Mar 7 2015 Jerry James <loganjerry@gmail.com> - 2.13-20.git20141013
- Rebuild with Singular support
* Fri Mar 6 2015 Jerry James <loganjerry@gmail.com> - 2.13-19.git20141013
- Add -gcc5 patch
- Disable hardening flags, which kill RTLD_LAZY
- Don't try to fix undefined symbols in the plugins anymore
* Thu Mar 05 2015 Jitka Plesnikova <jplesnik@redhat.com> - 2.13-19.git20141013
- Rebuild for perl 5.20.2
* Wed Feb 04 2015 Petr Machata <pmachata@redhat.com> - 2.13-18.git20141013
- Bump for rebuild.
* Mon Feb 2 2015 Jerry James <loganjerry@gmail.com> - 2.13-17.git20141013
- Rebuild for eigen3 3.2.4, lrslib 0.5.1, and normaliz 2.12.2
* Thu Jan 29 2015 Petr Machata <pmachata@redhat.com> - 2.13-16.git20141013
- Rebuild for boost 1.57.0
* Mon Jan 19 2015 Jerry James <loganjerry@gmail.com> - 2.13-15.git20141013
- Add -exit patch to fix crash on exit
* Thu Jan 15 2015 Jerry James <loganjerry@gmail.com> - 2.13-14.git20141013
- Rebuild for eigen3 3.2.3
* Mon Nov 10 2014 Jerry James <loganjerry@gmail.com> - 2.13-13.git20141013
- Rebuild with Singular support
* Mon Nov 10 2014 Jerry James <loganjerry@gmail.com> - 2.13-12.git20141013
- Update to latest perpetual beta snapshot
* Tue Sep 16 2014 Jerry James <loganjerry@gmail.com> - 2.13-11.git20140811
- Rebuild with Singular support
* Tue Sep 16 2014 Jerry James <loganjerry@gmail.com> - 2.13-10.git20140811
- Rebuild for perl 5.20.1
- New -singular subpackage to reduce pain of Singular+polymake updates
* Thu Sep 11 2014 Jerry James <loganjerry@gmail.com> - 2.13-9.git20140811
- Rebuild with Singular support
* Thu Sep 11 2014 Jerry James <loganjerry@gmail.com> - 2.13-8.git20140811
- Update to perpetual beta snapshot that supports perl 5.20 (bz 1139212)
* Fri Aug 29 2014 Jitka Plesnikova <jplesnik@redhat.com> - 2.13-8
- Perl 5.20 rebuild
- Disable BR Singular-devel when perl bootstrapping
* Sun Aug 17 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.13-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Fri Aug 8 2014 Jerry James <loganjerry@gmail.com> - 2.13-6
- Rebuild with Singular support
* Tue Aug 5 2014 Jerry James <loganjerry@gmail.com> - 2.13-5
- Rebuild for libnormaliz 2.11.2 and eigen3 3.2.2
* Sat Jun 07 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.13-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Wed May 28 2014 Jerry James <loganjerry@gmail.com> - 2.13-3
- Rebuild for Singular 3-1-6
- Add configuration workarounds for Singular support
* Fri May 23 2014 Petr Machata <pmachata@redhat.com> - 2.13-2
- Rebuild for boost 1.55.0
* Tue Apr 29 2014 Jerry James <loganjerry@gmail.com> - 2.13-1
- New upstream release: build against rebuilt Singular
* Tue Apr 29 2014 Jerry James <loganjerry@gmail.com> - 2.13-0
- New upstream release: bootstrap build without Singular support
* Wed Apr 2 2014 Jerry James <loganjerry@gmail.com> - 2.12-15.svn20140326
- Update to latest "perpetual beta" for bug fixes
- Add conditional to build without Singular support
* Wed Mar 12 2014 Jerry James <loganjerry@gmail.com> - 2.12-14.svn20131128
- Build with Singular support
- Make transitive dependency on eigen3 (via sympol) explicit
* Sat Jan 18 2014 Jerry James <loganjerry@gmail.com> - 2.12-13.svn20131128
- Update Requires filters
* Fri Jan 17 2014 Jerry James <loganjerry@gmail.com> - 2.12-12.svn20131128
- Update to latest "perpetual beta" for bug fixes
- Enable building new ppl and libnormaliz extensions
* Wed Jan 8 2014 Jerry James <loganjerry@gmail.com> - 2.12-11.svn20130813
- Rebuild for perl 5.18.2
- Add -format patch to fix -Werror=format-security failure
* Wed Aug 14 2013 Jerry James <loganjerry@gmail.com> - 2.12-10.svn20130813
- Update to latest "perpetual beta" for perl 5.18 compatibility (bz 992813)
* Sun Aug 04 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.12-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Wed Jul 24 2013 Petr Pisar <ppisar@redhat.com> - 2.12-8
- Perl 5.18 rebuild
* Sun Jul 21 2013 Rich Mattes <richmattes@gmail.com> - 2.12-7
- Rebuild for eigen3-3.1.3
* Wed May 15 2013 Jerry James <loganjerry@gmail.com> - 2.12-6
- Require version of perl used to build (bz 963486)
- perl(Term::ReadLine::Gnu) dependency is not autogenerated (bz 963486)
* Wed Mar 20 2013 Jerry James <loganjerry@gmail.com> - 2.12-5
- Add -lrslib patch to fix a segfault (bz 923269)
* Wed Feb 27 2013 Jerry James <loganjerry@gmail.com> - 2.12-4
- Remove rpath and -L%%{_libdir} from polymake-config --ldflags output
* Thu Jan 24 2013 Jerry James <loganjerry@gmail.com> - 2.12-3
- Also need to filter perl(Graphviz)
* Wed Jan 23 2013 Jerry James <loganjerry@gmail.com> - 2.12-2
- Change -libs patch to also remove -rpath arguments
- Filter Provides/Requires to hide private perl interfaces
- Remove the broken check script and explain why
* Thu Jan 10 2013 Jerry James <loganjerry@gmail.com> - 2.12-1
- Initial RPM