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# Tests are enabled
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%bcond_without tests
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%global srcname SALib
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%global _description %{expand:
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Python implementations of commonly used sensitivity analysis methods. Useful in
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systems modeling to calculate the effects of model inputs or exogenous factors
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on outputs of interest.
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Herman, J. and Usher, W. (2017) SALib: An open-source Python library for
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sensitivity analysis. Journal of Open Source Software, 2(9).
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Methods included:
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- Sobol Sensitivity Analysis (Sobol 2001, Saltelli 2002, Saltelli et al. 2010)
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- Method of Morris, including groups and optimal trajectories (Morris 1991,
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Campolongo et al. 2007)
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- Fourier Amplitude Sensitivity Test (FAST) (Cukier et al. 1973, Saltelli et
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al. 1999)
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- Delta Moment-Independent Measure (Borgonovo 2007, Plischke et al. 2013)
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- Derivative-based Global Sensitivity Measure (DGSM) (Sobol and Kucherenko
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2009)
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- Fractional Factorial Sensitivity Analysis (Saltelli et al. 2008)}
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Name: python-%{srcname}
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Version: 1.3.8
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Release: 1%{?dist}
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Summary: Sensitivity Analysis Library
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License: MIT
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URL: http://salib.github.io/SALib/
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Source0: %pypi_source
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# Add patch for numpy 1.18 support
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# https://github.com/SALib/SALib/pull/280
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SOURCE1: https://raw.githubusercontent.com/bsteubing/SALib/numpy_float_to_integer_issue/src/SALib/analyze/delta.py
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BuildArch: noarch
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%{?python_enable_dependency_generator}
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%description %_description
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%package -n python3-%{srcname}
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Summary: %{summary}
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BuildRequires: python3-devel
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# Not mentioned in setup.py, so won't be picked up by the generator
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Requires: %{py3_dist pandas}
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Requires: %{py3_dist numpy} >= 1.9.0
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Requires: %{py3_dist scipy}
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Requires: %{py3_dist matplotlib} >= 1.4.3
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%if %{with tests}
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BuildRequires: %{py3_dist pytest}
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BuildRequires: %{py3_dist pytest-cov}
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BuildRequires: %{py3_dist pandas}
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BuildRequires: %{py3_dist numpy} >= 1.9.0
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BuildRequires: %{py3_dist scipy}
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BuildRequires: %{py3_dist matplotlib} >= 1.4.3
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BuildRequires: %{py3_dist pyscaffold}
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%endif
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%{?python_provide:%python_provide python3-%{srcname}}
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%description -n python3-%{srcname} %_description
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%package doc
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Summary: %{summary}
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BuildRequires: %{py3_dist sphinx}
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BuildRequires: %{py3_dist recommonmark}
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%description doc
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Documentation for %{name}.
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%prep
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%autosetup -n %{srcname}-%{version}
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# Remove egg info
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rm -rf src/%{srcname}.egg-info
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# Remove uneeded version lock on pyscaffold
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sed -i "s/pyscaffold.*']/pyscaffold']/" setup.py
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06f7832 |
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# python3, not python in tests
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sed -i 's/python {cli}/python3 {cli}/' tests/test_cli_sample.py
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sed -i 's/python {cli}/python3 {cli}/' tests/test_cli_analyze.py
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06f7832 |
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# Correct permission
|
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chmod -x LICENSE.txt
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|
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# Remove /usr/bin/env python shebang
|
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find . -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' {} 2>/dev/null ';'
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06f7832 |
|
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# Correct end of line encoding
|
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sed -i 's/\r$//' LICENSE.txt
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sed -i 's/\r$//' src/SALib/analyze/rbd_fast.py
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|
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25a0fb6 |
# Copy over fixed version of delta.py
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cp -v -p %{SOURCE1} ./src/SALib/analyze/delta.py
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%build
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%py3_build
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make -C docs SPHINXBUILD=sphinx-build-3 html
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rm -rf docs/_build/html/{.doctrees,.buildinfo} -vf
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|
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%install
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%py3_install
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# Add a shebang to missing script
|
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sed -i "1 i \#\!%{__python3}" $RPM_BUILD_ROOT/%{_bindir}/salib.py
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|
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%check
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%if %{with tests}
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PYTHONPATH=$RPM_BUILD_ROOT%{python3_sitelib} pytest-%{python3_version}
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%endif
|
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06f7832 |
|
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%files -n python3-%{srcname}
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%license LICENSE.txt
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%doc README.rst README-advanced.md CHANGELOG.rst CITATIONS.rst AUTHORS.rst
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%{python3_sitelib}/%{srcname}
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%{python3_sitelib}/%{srcname}-%{version}-py%{python3_version}.egg-info
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%{_bindir}/salib
|
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%{_bindir}/salib.py
|
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06f7832 |
|
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06f7832 |
%files doc
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%license LICENSE.txt
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%doc docs/_build/html
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06f7832 |
|
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06f7832 |
%changelog
|
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|
25a0fb6 |
* Sun Feb 16 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.3.8-1
|
|
|
25a0fb6 |
- Update to latest release
|
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25a0fb6 |
|
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|
b51b91d |
* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.3.7-4
|
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|
b51b91d |
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
|
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b51b91d |
|
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|
c8ef6f1 |
* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 1.3.7-3
|
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|
c8ef6f1 |
- Rebuilt for Python 3.8.0rc1 (#1748018)
|
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|
c8ef6f1 |
|
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|
3740101 |
* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 1.3.7-2
|
|
|
3740101 |
- Rebuilt for Python 3.8
|
|
|
3740101 |
|
|
|
06f7832 |
* Mon Aug 05 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.3.7-1
|
|
|
06f7832 |
- Update to new release
|
|
|
06f7832 |
|
|
|
06f7832 |
* Tue Jan 29 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.1.3-1
|
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|
06f7832 |
- Initial build
|