From a58e8d7242aed9876897f1617632006b5df8580f Mon Sep 17 00:00:00 2001
From: sagitter <sagitter@fedoraproject.org>
Date: May 25 2020 17:19:45 +0000
Subject: Release 1.77


---

diff --git a/.gitignore b/.gitignore
index ace7439..213a5bb 100644
--- a/.gitignore
+++ b/.gitignore
@@ -16,3 +16,4 @@ biopython-1.54.tar.gz
 /biopython-1.74.tar.gz
 /biopython-1.75.tar.gz
 /biopython-1.76.tar.gz
+/biopython-1.77.tar.gz
diff --git a/python-biopython.spec b/python-biopython.spec
index 6f0c7ae..b59e34f 100644
--- a/python-biopython.spec
+++ b/python-biopython.spec
@@ -1,7 +1,8 @@
-%if 0%{?rhel} && 0%{?rhel} > 7
+%if 0%{?fedora} || 0%{?rhel} > 7
 %global with_python3 1
 %endif
 
+# Careful, the releases 1.77+ do not longer support Python 2.
 %if 0%{?rhel} && 0%{?rhel} == 7
 %global with_python2 1
 %endif
@@ -12,23 +13,20 @@
 %global py2_prefix python2
 %endif
 
-%if 0%{?fedora}
-%global with_python3 1
-%endif
-
 %if 0%{?python3_version_nodots} == 38
 %global with_check 1
 %else
 %global with_check 1
 %endif
 
-%global module biopython
+%global pypi_name biopython
+%global module %{pypi_name}
 
-Name:             python-biopython
-Version:          1.76
-Release:          3%{?dist}
+Name:             python-%{pypi_name}
+Version:          1.77
+Release:          1%{?dist}
 Summary:          Python tools for computational molecular biology
-Source0:          https://files.pythonhosted.org/packages/source/b/%{module}/%{module}-%{version}.tar.gz
+Source0:          %{pypi_source}
 
 Patch0:           %{name}-1.76_python39.patch
 
@@ -217,7 +215,7 @@ popd
 pushd python3
 %{__python3} setup.py install -O1 --skip-build --root=$RPM_BUILD_ROOT --install-data=%{_datadir}/python-biopython
 
-find Scripts -name '*.py' | xargs sed -i '1s|^#!/usr/bin/env python|#!%{__python3}|'
+find Scripts -name '*.py' | xargs pathfix.py -pn -i "%{__python3}"
 popd
 %endif
 
@@ -225,7 +223,7 @@ popd
 pushd python%{python3_other_pkgversion}
 %{__python3_other} setup.py install -O1 --skip-build --root=$RPM_BUILD_ROOT --install-data=%{_datadir}/python-biopython
 
-find Scripts -name '*.py' | xargs sed -i '1s|^#!/usr/bin/env python|#!%{__python3_other}|'
+find Scripts -name '*.py' | xargs pathfix.py -pn -i "%{__python3_other}"
 popd
 %endif
 
@@ -233,7 +231,7 @@ popd
 pushd python2
 %{__python2} setup.py install -O1 --skip-build --root=$RPM_BUILD_ROOT --install-data=%{_datadir}/python-biopython
 
-find Scripts -name '*.py' | xargs sed -i '1s|^#!/usr/bin/env python|#!%{__python2}|'
+find Scripts -name '*.py' | xargs pathfix.py -pn -i "%{__python2}"
 popd
 %endif
 
@@ -244,7 +242,7 @@ popd
 %if 0%{?with_python2}
 pushd python2
 export PYTHONPATH=$RPM_BUILD_ROOT%{python2_sitearch}
-find . -name 'run_tests.py' | xargs sed -i '1s|^#!/usr/bin/env python|#!%{__python2}|'
+find . -name 'run_tests.py' | xargs pathfix.py -pn -i "%{__python2}"
 for test in `ls test_*.py | grep -v Tutorial`; do
 %{__python2} run_tests.py --offline -v ${test}
 done
@@ -254,7 +252,7 @@ popd
 # See https://github.com/biopython/biopython/issues/855; https://github.com/biopython/biopython/issues/1889
 %if 0%{?with_python3}
 pushd python3/Tests
-find . -name 'run_tests.py' | xargs sed -i '1s|^#!/usr/bin/env python|#!%{__python3}|'
+find . -name 'run_tests.py' | xargs pathfix.py -pn -i "%{__python3}"
 # See https://github.com/biopython/biopython/issues/2128; https://github.com/biopython/biopython/issues/2120
 # and https://bugs.python.org/issue24214
 %if 0%{?python3_version_nodots} == 38
@@ -272,7 +270,7 @@ popd
 # See https://github.com/biopython/biopython/issues/855
 %if 0%{?with_python3_other}
 pushd python%{python3_other_pkgversion}/Tests
-find . -name 'run_tests.py' | xargs sed -i '1s|^#!/usr/bin/env python|#!%{__python3_other}|'
+find . -name 'run_tests.py' | xargs pathfix.py -pn -i "%{__python3_other}"
 for test in `ls test_*.py | grep -v Nexus | grep -v Phylo | grep -v Tutorial | grep -v bgzf`; do
 echo $LANG
 export PYTHONPATH=$RPM_BUILD_ROOT%{python3_other_sitearch}
@@ -307,7 +305,10 @@ popd
 %if 0%{?with_python3_other}
 %files -n python%{python3_other_pkgversion}-%{module}
 %doc python%{python3_other_pkgversion}/Scripts
-%doc python%{python3_other_pkgversion}/CONTRIB.rst python%{python3_other_pkgversion}/DEPRECATED.rst python%{python3_other_pkgversion}/NEWS.rst python%{python3_other_pkgversion}/README.rst
+%doc python%{python3_other_pkgversion}/CONTRIB.rst
+%doc python%{python3_other_pkgversion}/DEPRECATED.rst
+%doc python%{python3_other_pkgversion}/NEWS.rst
+%doc python%{python3_other_pkgversion}/README.rst
 %license python%{python3_other_pkgversion}/LICENSE.rst
 %{python3_other_sitearch}/*egg-info
 %{python3_other_sitearch}/Bio/
@@ -319,6 +320,9 @@ popd
 %license %{module}-%{version}/LICENSE.rst
 
 %changelog
+* Mon May 25 2020 Antonio Trande <sagitter@fedoraproject.org> - 1.77-1
+- Release 1.77
+
 * Sat Feb 29 2020 Antonio Trande <sagitter@fedoraproject.org> - 1.76-3
 - Patched for Python-3.9
 
diff --git a/sources b/sources
index a1fa924..4325b2c 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (biopython-1.76.tar.gz) = cd98e5cff151f8f286e9bf9763cf4b61bceb80b2696c5ac98aae6ee180f2ab2493bd1e1852a0fd5f27c71550f8a609e5163b1c1900ae32314dd76e36b6f06de0
+SHA512 (biopython-1.77.tar.gz) = 6f4b03d46c591e1f49dd1e76bcc4ac5c9aaa2bf748c9dd37ffc5de5a613fbeed38f89b418c01601dd99c65b13b2e294bc8d81ffafc42a9ff1b309c84f840d0d5