# No py3 since it depends on nibabel which we only provide for py3

%global srcname dipy

%global desc %{expand: \

DIPY is a python toolbox for analysis of MR diffusion imaging.

DIPY is for research only; please do not use results from DIPY for clinical

decisions.

Current information can always be found from the DIPY website - http://dipy.org}

# Full documentation downloads 100+MB of data, so we'd rather users look at the

# upstream documentation

%bcond_with docs

# Fail because of xvfb related errors

%bcond_with tests

%{?python_enable_dependency_generator}

Name:           python-%{srcname}

Version:        1.3.0

Release:        1%{?dist}

Summary:        Diffusion MRI utilities in python

License:        BSD

URL:            http://nipy.org/dipy/

Source0:        https://github.com/nipy/dipy/archive/%{version}/%{name}-%{version}.tar.gz

%description

%{desc}

%package -n python3-%{srcname}

Summary:        %{summary}

BuildRequires:      python3-devel

BuildRequires:      gcc

BuildRequires:      %{py3_dist setuptools}

BuildRequires:      %{py3_dist pytest}

BuildRequires:      %{py3_dist Cython}

BuildRequires:      %{py3_dist numpy} >= 1.7.1

BuildRequires:      %{py3_dist scipy} >= 0.9

BuildRequires:      %{py3_dist tqdm}

BuildRequires:      %{py3_dist nibabel} >= 3.0

BuildRequires:      %{py3_dist h5py} >= 2.4

BuildRequires:      %{py3_dist matplotlib}

%if %{with tests}

BuildRequires:      %{py3_dist xvfbwrapper}

BuildRequires:      xorg-x11-server-Xvfb

%endif

Requires:           %{py3_dist h5py} >= 2.4

Requires:           %{py3_dist nibabel} >= 2.3

Requires:           %{py3_dist scipy} >= 0.9

Requires:           %{py3_dist numpy} >= 1.7.1

# Required for some modules but not in Fedora yet

# BuildRequires:      %%{py3_dist cvxpy}

Suggests:           %{py3_dist ipython}

%py_provides python3-%{srcname}

%description -n python3-%{srcname}

%{desc}

%package doc

BuildArch:      noarch

Summary:        %{summary}

%description doc

Documentation for %{name}.

%prep

%autosetup -n %{srcname}-%{version}

export TEST_WITH_XVFB=true

# clean it all up (from the Makefile)

find . -name "*.so" -print -delete

find . -name "*.pyd" -print -delete

find . -name "*.c" -print -delete

find . -name "*.html" -print -delete

rm -rf build

rm -rf docs/_build

rm -rf docs/dist

rm -rf dipy/dipy.egg-info

# Correct interpreter for these---used in building docs and so on

sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' doc/tools/docgen_cmd.py

sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' doc/tools/build_modref_templates.py

find tools/ -name "*.py" -exec sed -i 's/#!\/usr\/bin\/env python/#!\/usr\/bin\/python3/' '{}' \;

# Other shebangs and permission fixes

for f in "dipy/boots/resampling.py" "dipy/reconst/benchmarks/bench_csd.py" "dipy/reconst/dki.py" "dipy/reconst/dti.py"  "dipy/workflows/mask.py" "dipy/workflows/tracking.py" "dipy/reconst/dki_micro.py"

do

    chmod -x "$f"

    sed -i '/^#!\/usr\/bin\/env python/ d' "$f"

    sed -i '/^#!\/usr\/bin\/python/ d' "$f"

done

%build

export TEST_WITH_XVFB=true

%py3_build

%if %{with docs}

pushd doc

    export PYTHONPATH=../build/

    make SPHINXBUILD=sphinx-build-3 PYTHON=%{__python3} html

    rm -rf _build/html/.doctrees

    rm -rf _build/html/.buildinfo

popd

%endif

%install

%py3_install

%check

export TEST_WITH_XVFB=True

%if %{with tests}

%{__python3} -c 'import dipy; dipy.test()'

%endif

%files -n python3-%{srcname}

%license LICENSE

%doc README.rst Changelog AUTHOR

%{_bindir}/dipy_align_affine

%{_bindir}/dipy_align_syn

%{_bindir}/dipy_apply_transform

%{_bindir}/dipy_buan_lmm

%{_bindir}/dipy_buan_profiles

%{_bindir}/dipy_buan_shapes

%{_bindir}/dipy_denoise_lpca

%{_bindir}/dipy_denoise_mppca

%{_bindir}/dipy_denoise_nlmeans

%{_bindir}/dipy_fetch

%{_bindir}/dipy_fit_csa

%{_bindir}/dipy_fit_csd

%{_bindir}/dipy_fit_dki

%{_bindir}/dipy_fit_dti

%{_bindir}/dipy_fit_ivim

%{_bindir}/dipy_fit_mapmri

%{_bindir}/dipy_gibbs_ringing

%{_bindir}/dipy_horizon

%{_bindir}/dipy_info

%{_bindir}/dipy_labelsbundles

%{_bindir}/dipy_mask

%{_bindir}/dipy_median_otsu

%{_bindir}/dipy_recobundles

%{_bindir}/dipy_reslice

%{_bindir}/dipy_slr

%{_bindir}/dipy_snr_in_cc

%{_bindir}/dipy_track

%{_bindir}/dipy_track_pft

%{_bindir}/dipy_split

%{python3_sitearch}/%{srcname}

%{python3_sitearch}/%{srcname}-%{version}-py%{python3_version}.egg-info

%files doc

%license LICENSE

# Installed by package

%{_docdir}/%{srcname}/examples

%if %{with docs}

%doc doc/_build/html

%endif

%changelog

* Sat Nov 28 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.3.0-1

- Update to 1.3.0

* Sun Sep 13 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.2.0-1

- Update to new release

* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.1-3

- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild

* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 1.1.1-2

- Rebuilt for Python 3.9

* Sat Feb 01 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.1.1-1

- Update to new version

- Bump nibabel requirement version

* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 1.0.0-3

- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 1.0.0-2

- Rebuilt for Python 3.8.0rc1 (#1748018)

* Sat Aug 31 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 1.0.0-1

- update to 1.0.0

* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 0.16.0-3

- Rebuilt for Python 3.8

* Fri Jul 26 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.16.0-2

- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild

* Mon Apr 08 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.16.0-1

- Update to latest upstream release

- Use gittag instead of snapshot

- Add new binaries

* Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.15.0-0.5.git756b519

- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild

* Tue Nov 27 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.15.0-0.4.git756b519

- Provide Requires explictly as they are not picked up by the autogenerator

* Mon Nov 19 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.15.0-0.3.git756b519

- remove python3-vtk dep

- not available in F29 currently, and only needed for doc generation which is disabled

* Mon Nov 19 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.15.0-0.2.git756b519

- Disable doc generation

* Thu Nov 15 2018 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.15.0-0.1.git756b519

- Initial rpm build