# Koji has two types of builders: # 16Gb + 6 cores # 128Gb + 48 cores # There's no way to choose either, so we rely on luck # # This needs about 15 gigs per thread, otherwise OOMs. So, we calculate the number of threads we can afford to use for make: # meminfo gives output in kB (1000 bytes) %global numthreads %(awk '/MemTotal:/ {print int($2/15e6)}' /proc/meminfo) # But make sure it is > 0 %if 0%{numthreads} == 0 %global numthreads 1 %endif # If _smp_build_ncpus is not defined (on older rpms) # assume there's only one %if 0%{?_smp_build_ncpus} == 0 %global _smp_build_ncpus 1 %endif # Use the smaller number of threads %if 0%{numthreads} > 0%{?_smp_build_ncpus} %global numthreads %{?_smp_build_ncpus} %endif %global modname graph-tool %global pymodname graph_tool # Builds fail with LTO %global _lto_cflags %{nil} %global _description %{expand: Graph-tool is an efficient Python module for manipulation and statistical analysis of graphs (a.k.a. networks). Contrary to most other python modules with similar functionality, the core data structures and algorithms are implemented in C++, making extensive use of template metaprogramming, based heavily on the Boost Graph Library. This confers it a level of performance that is comparable (both in memory usage and computation time) to that of a pure C/C++ library. Please refer to https://graph-tool.skewed.de/static/doc/index.html for documentation.} Name: python-%{modname} Version: 2.33 Release: 2%{?dist} Summary: Efficient network analysis tool written in Python License: LGPLv3+ URL: https://graph-tool.skewed.de/ Source0: https://downloads.skewed.de/%{modname}/%{modname}-%{version}.tar.bz2 # Need to reduce debugging symbols to make compiling possible on these # architectures at all. See: # https://lists.fedoraproject.org/archives/list/devel@lists.fedoraproject.org/message/GIBNORLNGSUHAMX6PZ7XUPQ2SQUK7AX4/ # # Works around: # Fails on armv7hl: # virtual memory exhausted # https://bugzilla.redhat.com/show_bug.cgi?id=1771024 # Fails on ppc64le: # note: variable tracking size limit exceeded with # '-fvar-tracking-assignments', retrying without # https://bugzilla.redhat.com/show_bug.cgi?id=1771031 # Fails on s390x: # note: variable tracking size limit exceeded with # '-fvar-tracking-assignments', retrying without # https://bugzilla.redhat.com/show_bug.cgi?id=1771034 %ifarch armv7hl ppc64le s390x %global optflags %(echo %{optflags} | sed 's/-g /-g1 /') %endif # Fails on i686, armv7hl # ../../../src/pcg-cpp/include/pcg_random.hpp:1247:40: error: call to # non-'constexpr' function 'pcg_extras::uint_x4 # pcg_extras::operator-(const pcg_extras::uint_x4&, const # pcg_extras::uint_x4&) [with UInt = unsigned int; UIntX2 = long # long unsigned int]' # 1247 | (state_type(1U) << table_pow2) - state_type(1U); # | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ # In file included from ../../../src/pcg-cpp/include/pcg_extras.hpp:84, # from ../../../src/pcg-cpp/include/pcg_random.hpp:114, # from ../../../src/graph/random.hh:21, # from graph_motifs.hh:26, # from graph_motifs.cc:24: # ../../../src/pcg-cpp/include/pcg_uint128.hpp:642:22: note: # 'pcg_extras::uint_x4 pcg_extras::operator-(const # pcg_extras::uint_x4&, const pcg_extras::uint_x4&) [with # UInt = unsigned int; UIntX2 = long long unsigned int]' declared here # 642 | uint_x4 operator-(const uint_x4& a, # | ^~~~~~~~ # issue filed: https://git.skewed.de/count0/graph-tool/issues/617 # https://bugzilla.redhat.com/show_bug.cgi?id=1771023 # https://bugzilla.redhat.com/show_bug.cgi?id=1771024 # # Fails on ppc64le: # /usr/include/boost/math/tools/promotion.hpp:138:10: # error: static assertion failed: # Sorry, but this platform does not have sufficient long double support for # the special functions to be reliably implemented. # https://bugzilla.redhat.com/show_bug.cgi?id=1771031 # # Takes ~23 hours on x86_64 if we get unlucky and get a 6 core 16gig machine, # ~4 hours if we get a 48 core 128gig machine # Takes ~45 hours on aarch64 ExcludeArch: %{ix86} armv7hl ppc64le # Workaround for https://git.skewed.de/count0/graph-tool/issues/613 # CGAL 5.x is now header only # Required on F32+ %if 0%{?fedora} >= 32 Patch0: 0001-Use-header-only-CGAL-library.patch %endif # Remove the compiler flags upstream tries to put Patch1: 0002-Remove-upstreams-flags.patch BuildRequires: git-core BuildRequires: autoconf BuildRequires: automake BuildRequires: libtool BuildRequires: gawk %description %_description %package -n python3-%{modname} Summary: %{summary} BuildRequires: python3-devel BuildRequires: boost-devel BuildRequires: boost-python3-devel BuildRequires: CGAL-devel BuildRequires: cairomm-devel BuildRequires: expat-devel BuildRequires: gcc-g++ BuildRequires: gmp-devel BuildRequires: gtk3-devel BuildRequires: python3-cairo-devel BuildRequires: python3-devel BuildRequires: %{py3_dist scipy} BuildRequires: %{py3_dist matplotlib} BuildRequires: %{py3_dist numpy} BuildRequires: sparsehash-devel Provides: graph-tool%{?_isa} = %{version}-%{release} # Not a setuptools style project, but leaving this in %{?python_provide:%python_provide python3-%{modname}} %description -n python3-%{modname} %_description %prep %autosetup -S git -n %{modname}-%{version} # Remove shebangs find . -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/env.*$/ d' {} 2>/dev/null ';' %build ./autogen.sh %configure --with-python-module-path=%{python3_sitearch} --with-boost-libdir=%{_libdir} echo "Building with %{numthreads} of %{?_smp_build_ncpus} available CPUs" # Uses the latest value set by -j %make_build -j%{numthreads} %install %make_install # Remove installed doc sources rm -rf $RPM_BUILD_ROOT/%{_datadir}/doc/%{modname} # Remove static objects find $RPM_BUILD_ROOT -name "*.la" -delete %files -n python3-%{modname} %license COPYING %doc README.md ChangeLog AUTHORS %{python3_sitearch}/%{pymodname} %{_libdir}/pkgconfig/%{modname}-py%{python3_version}.pc %changelog * Sat Aug 28 2021 Benjamin A. Beasley - 2.33-2 - Work around resource limits to re-enable s390x, and get closer to the root causes on the remaining excluded architectures * Fri Sep 04 2020 Ankur Sinha - 2.33-1 - Update to latest release - Disable LTO - update COPYING file name - Update license * Sat Aug 01 2020 Fedora Release Engineering - 2.29-7 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Wed Jul 29 2020 Fedora Release Engineering - 2.29-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Sat May 30 2020 Jonathan Wakely - 2.29-5 - Rebuilt for Boost 1.73 - Simplify shell command to determine number of threads to use * Tue May 26 2020 Miro Hrončok - 2.29-4 - Rebuilt for Python 3.9 * Thu Jan 30 2020 Fedora Release Engineering - 2.29-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Sat Nov 09 2019 Ankur Sinha - 2.29-2 - Exclude builds on arches: usually falls short of resources * Fri Nov 01 2019 Ankur Sinha - 2.29-1 - Remove unneeded shebangs * Tue Oct 22 2019 Ankur Sinha - 2.29-1 - Improve conditional to handle cases where _smp_build_ncpus is not defined - Correct conditional hack * Tue Oct 15 2019 Ankur Sinha - 2.29-1 - Initial build