%global pypi_name lfpy

%global pretty_name LFPy

%global desc %{expand: \

LFPy is a Python-module for calculation of extracellular potentials from

multi-compartment neuron models. It relies on the NEURON simulator ( and uses

the Python interface ( it provides.LFPy provides a set of easy-to-use Python

classes for setting up your model, running your simulations and calculating the

extracellular potentials arising from activity in your model neuron. If you

have a model...}

%global py_version python3-

%global py_dist python3.8dist

Name:           python-lfpy

Version:        2.0.7

Release:        5%{?dist}

Summary:        Model extracellular potentials of multicompartment neuron models built on NEURON

License:        GPLv3

URL:            http://LFPy.readthedocs.io

Source0:        %{pypi_source %pretty_name}

# Requires NEURON, so limited to arches that NEURON and Random123 support

ExcludeArch:    mips64r2 mips32r2 s390

# Upstream does not support powerpc or 32bit arches

# https://github.com/LFPy/LFPy/issues/173

# Bug: ppc: https://bugzilla.redhat.com/show_bug.cgi?id=1838565

# Bug: armv7hl: https://bugzilla.redhat.com/show_bug.cgi?id=1838564

ExcludeArch:    %{power64} %{ix86} armv7hl

%?python_enable_dependency_generator

BuildRequires:  gcc

BuildRequires:  libtool

BuildRequires:  readline-devel

BuildRequires:  ncurses-devel

BuildRequires:  python3-devel

BuildRequires:  %{py3_dist cython}

BuildRequires:  %{py3_dist h5py}

BuildRequires:  %{py3_dist neuron}

BuildRequires:  neuron-devel

BuildRequires:  %{py3_dist pytest}

BuildRequires:  %{py3_dist numpy}

BuildRequires:  %{py3_dist scipy}

BuildRequires:  %{py3_dist setuptools}

BuildRequires:  python3-mpi4py-openmpi

BuildRequires:  python3-mpi4py-mpich

BuildRequires:  mpich-devel

BuildRequires:  openmpi-devel

BuildRequires:  rpm-mpi-hooks

%description

%{desc}

%package -n     python3-%{pypi_name}

Summary:        %{summary}

%description -n python3-%{pypi_name}

%{desc}

%{?python_provide:%python_provide python3-%{pypi_name}}

Requires:   %{py3_dist h5py}

Requires:   %{py3_dist numpy}

Requires:   %{py3_dist scipy}

Requires:   %{py3_dist neuron}

Requires:   python3-mpi4py-openmpi

Requires:   python3-mpi4py-mpich

%prep

%autosetup -n %{pretty_name}-%{version}

# Remove bundled egg-info

rm -rf %{pretty_name}.egg-info

# Remove mpi4py from requirements

sed -i '/mpi4py/ d' setup.py

for lib in $(find . -type f -name "*.py"); do

 sed '1{\@^#!/usr/bin/env python@d}' $lib > $lib.new &&

 touch -r $lib $lib.new &&

 mv $lib.new $lib

done

%build

%py3_build

%install

%py3_install

%check

# https://github.com/LFPy/LFPy/blob/master/continuous_integration/test_script.sh#L16

%{_mpich_load}

pytest-%{python3_version} LFPy/test/test*py

%{_mpich_unload}

%{_openmpi_load}

pytest-%{python3_version} LFPy/test/test*py

%{_openmpi_unload}

# Remove unneeded test files: they include objects and libraries generated from neuron.

rm -rf %{buildroot}/%{python3_sitearch}/%{pretty_name}/test/

# Remove associated debuginfo files

rm -rf %{buildroot}/usr/lib/debug/%{python3_sitearch}/%{pretty_name}/test/

%files -n python3-%{pypi_name}

%license LICENSE

%doc README.md

%{python3_sitearch}/%{pretty_name}

%{python3_sitearch}/%{pretty_name}-%{version}-py%{python3_version}.egg-info

%changelog

* Thu May 21 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.7-5

- Re-enable tests

- Add arches that we cannot build on

- List bugs for for ExcludeArch

* Thu May 21 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.7-4

- Update supported architectures

* Wed May 13 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.7-3

- Cosmetic changes to spec

- Add missing Requires/BR on neuron

- Enable test

- List supported arches

- Remove unneeded test files

* Wed May 13 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.0.7-2

- Remove auto-generated mpi4py requires, we use explicitly mention the necessary packages in Requires

* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.0.3-8

- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 2.0.3-7

- Rebuilt for Python 3.8.0rc1 (#1748018)

* Sat Aug 31 2019 Luis Bazan <lbazan@fedoraproject.org> - 2.0.3-6

- fix typos in spec

* Mon Aug 26 2019 Luis Bazan <lbazan@fedoraproject.org> - 2.0.3-5

- fix comment #14 BZ #1727491

* Mon Aug 26 2019 Luis Bazan <lbazan@fedoraproject.org> - 2.0.3-4

- fix mixed space and tabs

- non-executable script

* Mon Aug 26 2019 Luis Bazan <lbazan@fedoraproject.org> - 2.0.3-3

- fix some typos and import source

* Thu Aug 22 2019 Miro Hrončok <mhroncok@redhat.com> - 2.0.3-2

- Rebuilt for Python 3.8

* Thu Jun  6 2019 victortyau <victortyau@gmail.com> 2.0.3-1

- Initial package for fedora