%global desc %{expand: \

LFPy is a Python-module for calculation of extracellular potentials from

multi-compartment neuron models. It relies on the NEURON simulator ( and uses

the Python interface ( it provides.LFPy provides a set of easy-to-use Python

classes for setting up your model, running your simulations and calculating the

extracellular potentials arising from activity in your model neuron. If you

have a model...}

Name:           python-lfpy

Version:        2.2.4

Release:        %autorelease

Summary:        Model extracellular potentials of multicompartment neuron models built on NEURON

License:        GPLv3

URL:            http://LFPy.readthedocs.io

Source0:        %{pypi_source LFPy}

# Requires NEURON, so limited to arches that NEURON and Random123 support

ExcludeArch:    mips64r2 mips32r2 s390

# Upstream does not support powerpc or 32bit arches

# https://github.com/LFPy/LFPy/issues/173

# Bug: ppc: https://bugzilla.redhat.com/show_bug.cgi?id=1838565

# Bug: armv7hl: https://bugzilla.redhat.com/show_bug.cgi?id=1838564

ExcludeArch:    %{power64} %{ix86} armv7hl

BuildRequires:  python3-devel

BuildRequires:  python3-wheel

BuildRequires:  python3-pip

# Automatic dep generator doesn't like the mod files mentioned in the setup.py file, and tries to parse them as deps:

# error: Dependency tokens must begin with alpha-numeric, '_' or '/': "./expsyni.mod" "./sinsyn.mod"

# Should maybe reported as a pyproject rpm macro bug?

# So we install these manually

BuildRequires:  python3-Cython

BuildRequires:  python3-numpy

BuildRequires:  python3-scipy

BuildRequires:  python3-lfpykit >= 0.4

BuildRequires:  python3-h5py

BuildRequires:  python3-neuron

BuildRequires:  neuron-devel

BuildRequires:  python3-pytest

# not included in setup.py

BuildRequires:  python3-mpi4py-openmpi

BuildRequires:  python3-neuron-openmpi

BuildRequires:  python3-mpi4py-mpich

BuildRequires:  python3-neuron-mpich

BuildRequires:  mpich-devel

BuildRequires:  openmpi-devel

BuildRequires:  rpm-mpi-hooks

%description

%{desc}

%package -n     python3-lfpy

Summary:        %{summary}

Requires:   python3-mpi4py-openmpi

Requires:   python3-mpi4py-mpich

Requires:   neuron-devel

%description -n python3-lfpy

%{desc}

%prep

%autosetup -n LFPy-%{version}

# Remove mpi4py from requirements

sed -i '/mpi4py/ d' setup.py

for lib in $(find . -type f -name "*.py"); do

 sed '1{\@^#!/usr/bin/env python@d}' $lib > $lib.new &&

 touch -r $lib $lib.new &&

 mv $lib.new $lib

done

%build

%pyproject_wheel

%install

%pyproject_install

# Remove unneeded test files: they include objects and libraries generated from neuron.

#rm -rf %{buildroot}/%{python3_sitearch}/LFPy/test/

# Remove associated debuginfo files

#rm -rf %{buildroot}/usr/lib/debug/%{python3_sitearch}/LFPy/test/

%pyproject_save_files LFPy

%check

# https://github.com/LFPy/LFPy/blob/master/continuous_integration/test_script.sh#L16

%{_mpich_load}

%{pytest} LFPy/test/

%{_mpich_unload}

%{_openmpi_load}

%{pytest} LFPy/test/

%{_openmpi_unload}

%files -n python3-lfpy -f %{pyproject_files}

%doc README.md

# temporary files generated for test

%exclude %{python3_sitearch}/LFPy/test/x86_64

%exclude %{python3_sitearch}/LFPy/test/

%changelog

%autochangelog