#global commit  f44636f00666b8eb869417960926d01690ff4f42

#global shortcommit #(c=#{commit}; echo ${c:0:7})

#global checkout_date 2023094

%global upstream_version  1.6.1

# setup.py does not list all requirements, and we also unbundle quite a few

# from the externals folder, so we can't only rely on the automatic generator

# here.

# Additionally, requirements.txt seems to be dev requirements, and is not used

# in setup.py for install_requires.

Name:           python-mne

%if "0%{?commit}" != "0"

Version:        %{upstream_version}^%{checkout_date}git%{shortcommit}

%global python_version  %{upstream_version}.dev%{checkout_date}

%else

Version:        %{upstream_version}

%global python_version  %{version}

%endif

Release:        %autorelease

Summary:        Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis

# Bundled FieldTrip

# https://github.com/fieldtrip/fieldtrip/blob/master/realtime/src/buffer/python/FieldTrip.py

# Not possible to package because it is matlab package with some plugins

# SPDX

License:        BSD-3-Clause

URL:            http://martinos.org/mne/

%if "0%{?commit}" != "0"

Source0:        https://github.com/mne-tools/mne-python/archive/%{commit}/%{name}-%{shortcommit}.tar.gz

%else

Source0:        https://github.com/mne-tools/mne-python/archive/v%{version}/%{name}-%{version}.tar.gz

%endif

#Source1:        https://s3.amazonaws.com/mne-python/datasets/MNE-sample-data-processed.tar.gz

# Fix pandas test

# https://github.com/mne-tools/mne-python/pull/12347

Patch:          https://patch-diff.githubusercontent.com/raw/mne-tools/mne-python/pull/12347.patch

# https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval

ExcludeArch:    %{ix86}

# The base package is arched to make it easier for us to detect arch-dependent

# test failures, since the tests will always be run on every platform, and

# easier for us to skip failing tests if necessary, since we can be sure that

# %%ifarch macros work as expected.

#

# Since the package still contains no compiled machine code, we still have no

# debuginfo.

%global debug_package %{nil}

BuildRequires:  python3-devel

%global _description %{expand:

This package is designed for sensor- and source-space analysis of M-EEG data,

including frequency-domain and time-frequency analyses and non-parametric

statistics.}

%description %_description

%package -n python3-mne

Summary:        %{summary}

# This package is now arched because some dependencies are not available on

# every architecture.

Provides:       bundled(bootstrap)

Provides:       bundled(js-jquery)

Provides:       bundled(js-jquery-ui)

Provides:       bundled(js-d3)

Provides:       bundled(js-mpld3)

Provides:       bundled(python3-FieldTrip)

BuildRequires:  python3-setuptools

BuildRequires:  python3-numpy

BuildRequires:  python3-scipy

# Test deps

BuildRequires:  python3-pytest

BuildRequires:  python3-pytest-mock

BuildRequires:  python3-pytest-xdist

BuildRequires:  python3-pytest-timeout

BuildRequires:  python3-matplotlib

BuildRequires:  python3-pandas

BuildRequires:  python3-h5py

BuildRequires:  python3-decorator

%ifnarch s390x

# https://bugzilla.redhat.com/show_bug.cgi?id=2116690

BuildRequires:  python3-pymatreader

%endif

BuildRequires:  python3-h5io

BuildRequires:  python3-jinja2

BuildRequires:  python3-scikit-learn

BuildRequires:  python3-Traits

BuildRequires:  python3-tqdm

BuildRequires:  python3-nibabel

%ifnarch s390x

BuildRequires:  python3-pyedflib

%endif

BuildRequires:  python3-nilearn

BuildRequires:  python3-qt5

BuildRequires:  python3-dipy

BuildRequires:  python3-xlrd

BuildRequires:  python3-nitime

BuildRequires:  python3-pooch

BuildRequires:  python3-nbformat

BuildRequires:  python3-vtk

# Makes pytest segfault

# BuildRequires:  python3-mayavi

Requires:       python3-matplotlib

Requires:       python3-decorator

Requires:       python3-h5io

Requires:       python3-six

Requires:       python3-tempita

Requires:       python3-tqdm

%ifnarch s390x

Requires:       python3-pymatreader

%endif

Recommends:     python3-scikit-learn

Recommends:     python3-pandas

Recommends:     python3-patsy

Recommends:     python3-pillow

Recommends:     python3-h5py

Recommends:     python3-statsmodels

Recommends:     python3-Traits

# Should be included by the dep generator as they're mentioned in setup.py

# Requires:       python3-numpy

# Requires:       python3-scipy

%description -n python3-mne %_description

%prep

%if "0%{?commit}" != "0"

%autosetup -n mne-python-%{commit} -p1

%else

%autosetup -n mne-python-%{version} -p1

%endif

# fix non-executable scripts

sed -i -e '1{\@^#!/usr/bin/env python@d}' mne/commands/*.py

sed -i -e '1{\@^#!/usr/bin/env python@d}' mne/datasets/hf_sef/hf_sef.py

sed -i -e '1{\@^#!/usr/bin/env python@d}' mne/stats/cluster_level.py

# https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_linters

sed -r -i 's/--cov[^[:blank:]]+//g' pyproject.toml

%generate_buildrequires

export SETUPTOOLS_SCM_PRETEND_VERSION='%{python_version}'

%pyproject_buildrequires

#cp -p %{SOURCE1} .

#python -c "import mne; mne.datasets.sample.data_path(verbose=True, download=False)"

%build

export SETUPTOOLS_SCM_PRETEND_VERSION='%{python_version}'

%pyproject_wheel

%install

export SETUPTOOLS_SCM_PRETEND_VERSION='%{python_version}'

%pyproject_install

%pyproject_save_files -l mne

%check

export SETUPTOOLS_SCM_PRETEND_VERSION='%{python_version}'

export MNE_SKIP_TESTING_DATASET_TESTS=true

export MNE_SKIP_NETWORK_TESTS=1

export MNE_DONTWRITE_HOME=true

export MNE_FORCE_SERIAL=true

# Deselected tests require additional data or don't work in mock

# Two deselected for sklearn warnings

ignore="${ignore-} --ignore=mne/datasets/tests/test_datasets.py"

ignore="${ignore-} --ignore=mne/utils/tests/test_numerics.py"

# Tools directory ignored as it contains tests for upstream release process

# required for some tests

mkdir subjects

# Hangs:

k="${k-}${k+ and }not test_thresholds[NumPy]"

# FileNotFoundError (file 'test_eyelink.asc' not in repo):

k="${k-}${k+ and }not test_annotations_without_offset"

%ifarch s390x || ppc64le

# Test fails on s390x and ppc64le.

k="${k-}${k+ and }not test_spectrum_complex[welch-False]"

%endif

# https://github.com/mne-tools/mne-python/blob/v1.0.3/tools/github_actions_test.sh#L7

# skip tests that require network

m='not (slowtest or pgtest)'

# Erroring on DeprecationWarnings makes sense upstream, but is probably too

# strict for distribution packaging.

%pytest -v -m "${m}" ${ignore-} -k "${k-}" -W 'ignore::DeprecationWarning'

%files -n python3-mne -f %{pyproject_files}

%doc README.rst examples

%{_bindir}/mne

%changelog

%autochangelog