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Name: python-neatdend
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Version: 0.9.2
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Release: %autorelease
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Summary: NEAT (NEural Analysis Toolkit)
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License: GPLv3
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URL: https://github.com/unibe-cns/NEAT
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Source0: %{url}/archive/v%{version}/%{name}-%{version}.tar.gz
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# Patches: https://github.com/sanjayankur31/NEAT/tree/fedora-v0.9.2
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# Support all arches for Neuron libs
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# issue filed: https://github.com/unibe-cns/NEAT/issues/142
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Patch0: 0001-feat-support-all-arches.patch
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Patch1: https://github.com/unibe-cns/NEAT/commit/504b39822b9913e5a8c6aff65df840cc2e31167d.patch
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# Fix compatibility with recent Matplotlib
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Patch2: https://github.com/unibe-cns/NEAT/commit/8eb1f4be85da0c8fdbcbac627c5198a67e29b22c.patch
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BuildRequires: python3-devel
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BuildRequires: python3-pytest
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BuildRequires: gcc gcc-c++
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BuildRequires: git-core
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BuildRequires: python3-neuron
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BuildRequires: neuron-devel
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# https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval
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ExcludeArch: %{ix86}
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%global _description %{expand:
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NEAT is a python library for the study,
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simulation and simplification of morphological neuron models.}
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%description %_description
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%package -n python3-neatdend
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Summary: %{summary}
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%description -n python3-neatdend %_description
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%prep
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%autosetup -n NEAT-%{version} -S git
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sed -i 's/^numpy~=1.20.2/numpy>=1.20.2/' requirements/requirements.txt
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sed -i 's/^matplotlib~=3.4.1/matplotlib>=3.4.1/' requirements/requirements.txt
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sed -i 's/^pytest~=5.3.2/pytest>=5.3.2/' requirements/requirements.txt
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sed -i 's/^scikit_learn~=0.24.2/scikit_learn>=0.24.2/' requirements/requirements.txt
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sed -i 's/^scipy~=1.6.3/scipy>=1.6.3/' requirements/requirements.txt
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sed -i 's/^sympy~=1.7.1/sympy>=1.7.1/' requirements/requirements.txt
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%generate_buildrequires
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%pyproject_buildrequires -r
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%build
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%pyproject_wheel
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%install
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%pyproject_install
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%pyproject_save_files neat
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%check
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# a few tests fail on i686.
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# Upstream report: https://github.com/unibe-cns/NEAT/issues/142#issuecomment-1107874903
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%ifnarch %{ix86}
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# we need to run these in a different directory to ensure that the module isn't
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# imported from the source directory
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mkdir testdir && pushd testdir
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# Python path must be defined so that compilechannels uses the installed module
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PYTHONPATH=$RPM_BUILD_ROOT/%{python3_sitelib}:$RPM_BUILD_ROOT/%{python3_sitearch} $RPM_BUILD_ROOT/%{_bindir}/compilechannels default
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%pytest ../
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popd
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%endif
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# remove files generated for the tests
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rm -rf find $RPM_BUILD_ROOT/%{python3_sitearch}/neat/tools/simtools/neuron/mech/*.mod
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rm -rf find $RPM_BUILD_ROOT/%{python3_sitearch}/neat/tools/simtools/neuron/%{_arch}
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%files -n python3-neatdend -f %{pyproject_files}
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%doc README.rst CODE_OF_CONDUCT.rst CONTRIBUTING.rst CONTRIBUTORS.rst
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%{_bindir}/compilechannels
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%changelog
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%autochangelog
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