%global forgeurl https://github.com/nipy/nibabel

%global _description %{expand:

Read / write access to some common neuroimaging file formats

This package provides read +/- write access to some common medical and

neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and

later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips

PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer

morphometry and annotation files. There is some very limited support for DICOM.

NiBabel is the successor of PyNIfTI.

The various image format classes give full or selective access to header (meta)

information and access to the image data is made available via NumPy arrays.

}

Name:           python-nibabel

Version:        5.2.1

Release:        %autorelease

Summary:        Python package to access a cacophony of neuro-imaging file formats

%global tag %{version}

%forgemeta

License:        MIT and PDDL-1.0

URL:            http://nipy.org/nibabel/

Source0:        %forgesource

# Fix failing docstring tests (Python >= 3.13)

# https://github.com/nipy/nibabel/issues/1311

Patch:          %{forgeurl}/pull/1315.patch

BuildArch:      noarch

%description %_description

%package -n python3-nibabel

Summary:        %{summary}

BuildRequires:  python3-devel

BuildRequires:  python3-setuptools

BuildRequires:  python3-pytest

BuildRequires:  python3-pytest-httpserver

BuildRequires:  help2man

Recommends:     python3-scipy

Recommends:     python3-pydicom

# Bundles their own version of netcdf reader

# that is different from Scipy version

Provides:       bundled(python%{python3_version}dist(netcdf))

%description -n python3-nibabel %_description

%prep

# warning: don't use -S git/git_am here, or hatchling/hatch-vcs generates a wrong version

%forgeautosetup -p1

# delete shebangs from files that don't need it

find nibabel/cmdline/  -name "*.py" -execdir sed -i '/^#!python/ d' '{}' \;

# correct other shebangs

# upstream uses #!python as a shebang, correct it

find . -name "*.py" -execdir sed -i 's|^#!python|#!%{python3}|' '{}' \;

# delete .gitignore files

rm -fv nibabel/{tests/data/,}.gitignore

%generate_buildrequires

%pyproject_buildrequires -x dicom,minc2,spm

%build

%pyproject_wheel

%install

%pyproject_install

%pyproject_save_files -l nibabel nisext

for binary in "parrec2nii" "nib-conform" "nib-convert" "nib-diff" "nib-dicomfs" "nib-ls" "nib-nifti-dx" "nib-roi" "nib-stats" "nib-tck2trk" "nib-trk2tck"

do

    echo "Generating man page for ${binary}"

    %py3_test_envvars help2man --no-info --no-discard-stderr --output="${binary}.1" "${binary}"

    install -t '%{buildroot}%{_mandir}/man1' -p -m 0644 -D "${binary}.1"

done

%check

%{pytest} -v

%files -n python3-nibabel -f %{pyproject_files}

%{_bindir}/parrec2nii

%{_bindir}/nib-conform

%{_bindir}/nib-convert

%{_bindir}/nib-diff

%{_bindir}/nib-dicomfs

%{_bindir}/nib-ls

%{_bindir}/nib-nifti-dx

%{_bindir}/nib-roi

%{_bindir}/nib-stats

%{_bindir}/nib-tck2trk

%{_bindir}/nib-trk2tck

%{_mandir}/man1/nib*

%{_mandir}/man1/parrec2nii.*

%changelog

%autochangelog