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b146524 |
%global forgeurl https://github.com/nipy/nibabel
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b146524 |
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e266bbb |
%global _description %{expand:
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16effbf |
Read / write access to some common neuroimaging file formats
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16effbf |
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16effbf |
This package provides read +/- write access to some common medical and
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16effbf |
neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and
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16effbf |
later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips
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16effbf |
PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer
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16effbf |
morphometry and annotation files. There is some very limited support for DICOM.
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16effbf |
NiBabel is the successor of PyNIfTI.
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16effbf |
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16effbf |
The various image format classes give full or selective access to header (meta)
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16effbf |
information and access to the image data is made available via NumPy arrays.
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e266bbb |
}
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e266bbb |
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e266bbb |
Name: python-nibabel
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Packit |
fe3be5f |
Version: 5.2.1
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e266bbb |
Release: %autorelease
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e266bbb |
Summary: Python package to access a cacophony of neuro-imaging file formats
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b146524 |
%global tag %{version}
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b146524 |
%forgemeta
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e266bbb |
License: MIT and PDDL-1.0
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e266bbb |
URL: http://nipy.org/nibabel/
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b146524 |
Source0: %forgesource
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21a6a5a |
# Fix failing docstring tests (Python >= 3.13)
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21a6a5a |
# https://github.com/nipy/nibabel/issues/1311
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21a6a5a |
Patch: %{forgeurl}/pull/1315.patch
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e266bbb |
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e266bbb |
BuildArch: noarch
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e266bbb |
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e266bbb |
%description %_description
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e266bbb |
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e266bbb |
%package -n python3-nibabel
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16effbf |
Summary: %{summary}
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203012b |
|
|
Igor Gnatenko |
50d5f9f |
BuildRequires: python3-devel
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Igor Gnatenko |
50d5f9f |
BuildRequires: python3-setuptools
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63bf75e |
BuildRequires: python3-pytest
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3d5f281 |
BuildRequires: python3-pytest-httpserver
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1632500 |
BuildRequires: help2man
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f62444a |
Recommends: python3-scipy
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16effbf |
Recommends: python3-pydicom
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3d5f281 |
# Bundles their own version of netcdf reader
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203012b |
# that is different from Scipy version
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f62444a |
Provides: bundled(python%{python3_version}dist(netcdf))
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16effbf |
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e266bbb |
%description -n python3-nibabel %_description
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16effbf |
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16effbf |
%prep
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61e3d16 |
# warning: don't use -S git/git_am here, or hatchling/hatch-vcs generates a wrong version
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b146524 |
%forgeautosetup -p1
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e266bbb |
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3d5f281 |
# delete shebangs from files that don't need it
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3d5f281 |
find nibabel/cmdline/ -name "*.py" -execdir sed -i '/^#!python/ d' '{}' \;
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3d5f281 |
|
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|
3d5f281 |
# correct other shebangs
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3d5f281 |
# upstream uses #!python as a shebang, correct it
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3d5f281 |
find . -name "*.py" -execdir sed -i 's|^#!python|#!%{python3}|' '{}' \;
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3d5f281 |
|
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|
3d5f281 |
# delete .gitignore files
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|
3d5f281 |
rm -fv nibabel/{tests/data/,}.gitignore
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3d5f281 |
|
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|
3d5f281 |
|
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|
e266bbb |
%generate_buildrequires
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e266bbb |
%pyproject_buildrequires -x dicom,minc2,spm
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7c1226c |
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|
16effbf |
%build
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e266bbb |
%pyproject_wheel
|
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|
16effbf |
|
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|
16effbf |
%install
|
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|
e266bbb |
%pyproject_install
|
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|
d2bed0d |
%pyproject_save_files -l nibabel nisext
|
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|
16effbf |
|
|
|
1632500 |
for binary in "parrec2nii" "nib-conform" "nib-convert" "nib-diff" "nib-dicomfs" "nib-ls" "nib-nifti-dx" "nib-roi" "nib-stats" "nib-tck2trk" "nib-trk2tck"
|
|
|
1632500 |
do
|
|
|
1632500 |
echo "Generating man page for ${binary}"
|
|
|
dce36fc |
%py3_test_envvars help2man --no-info --no-discard-stderr --output="${binary}.1" "${binary}"
|
|
|
1632500 |
install -t '%{buildroot}%{_mandir}/man1' -p -m 0644 -D "${binary}.1"
|
|
|
1632500 |
done
|
|
|
1632500 |
|
|
|
16effbf |
%check
|
|
|
4ad24f1 |
%{pytest} -v
|
|
|
16effbf |
|
|
|
e266bbb |
%files -n python3-nibabel -f %{pyproject_files}
|
|
|
16effbf |
%{_bindir}/parrec2nii
|
|
|
d29e70a |
%{_bindir}/nib-conform
|
|
|
2e430dd |
%{_bindir}/nib-convert
|
|
|
7c1226c |
%{_bindir}/nib-diff
|
|
|
16effbf |
%{_bindir}/nib-dicomfs
|
|
|
d29e70a |
%{_bindir}/nib-ls
|
|
|
16effbf |
%{_bindir}/nib-nifti-dx
|
|
|
203012b |
%{_bindir}/nib-roi
|
|
|
203012b |
%{_bindir}/nib-stats
|
|
|
2620a47 |
%{_bindir}/nib-tck2trk
|
|
|
2620a47 |
%{_bindir}/nib-trk2tck
|
|
|
1632500 |
%{_mandir}/man1/nib*
|
|
|
1632500 |
%{_mandir}/man1/parrec2nii.*
|
|
|
16effbf |
|
|
|
16effbf |
%changelog
|
|
|
d30a11f |
%autochangelog
|