%global modname nipy

%global _docdir_fmt %{name}

Name:           python-%{modname}

Version:        0.4.1

Release:        3%{?dist}

Summary:        Neuroimaging in Python FMRI analysis package

License:        BSD

URL:            http://nipy.org/nipy

Source0:        https://github.com/nipy/nipy/archive/%{version}/%{modname}-%{version}.tar.gz

BuildRequires:  git-core

BuildRequires:  gcc

BuildRequires:  lapack-devel blas-devel atlas-devel

%description

Neuroimaging tools for Python.

The aim of NIPY is to produce a platform-independent Python environment for the

analysis of functional brain imaging data using an open development model.

%package -n python2-%{modname}

Summary:        %{summary}

%{?python_provide:%python_provide python2-%{modname}}

BuildRequires:  python2-devel python-setuptools

BuildRequires:  numpy scipy python2-nibabel sympy

BuildRequires:  Cython

# Test deps

BuildRequires:  python2-nose

BuildRequires:  python2-six python2-transforms3d

BuildRequires:  nipy-data

Requires:       numpy scipy python2-nibabel sympy

Requires:       python2-six python2-transforms3d

Requires:       python-matplotlib

Suggests:       nipy-data

%description -n python2-%{modname}

Neuroimaging tools for Python.

The aim of NIPY is to produce a platform-independent Python environment for the

analysis of functional brain imaging data using an open development model.

Python 2 version.

%package -n python3-%{modname}

Summary:        %{summary}

%{?python_provide:%python_provide python3-%{modname}}

BuildRequires:  python3-devel python3-setuptools

BuildRequires:  python3-numpy python3-scipy python3-nibabel python3-sympy

BuildRequires:  python3-Cython

# Test deps

BuildRequires:  python3-nose

BuildRequires:  python3-six python3-transforms3d

BuildRequires:  nipy-data

Requires:       python3-numpy python3-scipy python3-nibabel python3-sympy

Requires:       python3-six python3-transforms3d

Requires:       python3-matplotlib

Suggests:       nipy-data

%description -n python3-%{modname}

Neuroimaging tools for Python.

The aim of NIPY is to produce a platform-independent Python environment for the

analysis of functional brain imaging data using an open development model.

Python 3 version.

%prep

%autosetup -n %{modname}-%{version} -p1 -Sgit

# Hard fix for bundled libs

find -type f -name '*.py' -exec sed -i \

  -e "s/from \.*externals.six/from six/"                             \

  -e "s/from nipy.externals.six/from six/"                           \

  -e "s/from nipy.externals import six/import six/"                  \

  -e "s/from nipy.externals.argparse/from argparse/"                 \

  -e "s/import nipy.externals.argparse as argparse/import argparse/" \

  -e "s/from \.*externals.transforms3d/from transforms3d/"           \

  {} ';'

find scripts/ -type f -exec sed -i \

  -e "s/from nipy.externals.argparse/from argparse/"                 \

  -e "s/import nipy.externals.argparse as argparse/import argparse/" \

  {} ';'

sed -i -e "/config.add_subpackage(.externals.)/d" nipy/setup.py

rm -vrf nipy/externals/

rm -rf lib/lapack_lite/

find examples -type f -name '*.py' -exec sed -i '1{\@^#!/usr/bin/env python@d}' {} ';'

%build

export NIPY_EXTERNAL_LAPACK=1

%py2_build

%py3_build

%install

export NIPY_EXTERNAL_LAPACK=1

%py3_install

%py2_install

find %{buildroot}%{python2_sitearch} -name '*.so' -exec chmod 755 {} ';'

find %{buildroot}%{python3_sitearch} -name '*.so' -exec chmod 755 {} ';'

find %{buildroot}%{python2_sitearch}/%{modname}/ %{buildroot}%{python3_sitearch}/%{modname}/ -name '*.py' -type f > tmp

while read lib

do

 sed -i '1{\@^#!/usr/bin/env python@d}' $lib

done < tmp

rm -f tmp

%check

TESTING_DATA=(                                             \

nipy/testing/functional.nii.gz                             \

nipy/modalities/fmri/tests/spm_hrfs.mat                    \

nipy/modalities/fmri/tests/spm_dmtx.npz                    \

nipy/testing/anatomical.nii.gz                             \

nipy/algorithms/statistics/models/tests/test_data.bin      \

nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat  \

nipy/modalities/fmri/tests/spm_bases.mat                   \

nipy/labs/spatial_models/tests/some_blobs.nii              \

nipy/modalities/fmri/tests/cond_test1.txt                  \

nipy/modalities/fmri/tests/dct_5.txt                       \

nipy/modalities/fmri/tests/dct_10.txt                      \

nipy/modalities/fmri/tests/dct_100.txt                     \

)

pushd build/lib.*-%{python2_version}

  for i in ${TESTING_DATA[@]}

  do

    mkdir -p ./${i%/*}/

    cp -a ../../$i ./$i

  done

  nosetests-%{python2_version} -v %{?skip_tests:-e %{skip_tests}} -I test_scripts.py

popd

pushd build/lib.*-%{python3_version}

  for i in ${TESTING_DATA[@]}

  do

    mkdir -p ./${i%/*}/

    cp -a ../../$i ./$i

  done

  PATH="%{buildroot}%{_bindir}:$PATH" nosetests-%{python3_version} -v %{?skip_tests:-e %{skip_tests}}

popd

%files -n python2-%{modname}

%license LICENSE

%doc README.rst AUTHOR THANKS examples

%{python2_sitearch}/%{modname}*

%files -n python3-%{modname}

%license LICENSE

%doc README.rst AUTHOR THANKS examples

%{_bindir}/nipy_3dto4d

%{_bindir}/nipy_4d_realign

%{_bindir}/nipy_4dto3d

%{_bindir}/nipy_diagnose

%{_bindir}/nipy_tsdiffana

%{python3_sitearch}/%{modname}*

%changelog

* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.1-3

- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild

* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.1-2

- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild

* Sun Feb 12 2017 Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 0.4.1-1

- Update to latest version

* Sat Feb 11 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.0-8

- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild

* Mon Dec 19 2016 Miro Hrončok <mhroncok@redhat.com> - 0.4.0-7

- Rebuild for Python 3.6

* Sat Oct 15 2016 Peter Robinson <pbrobinson@fedoraproject.org> - 0.4.0-6

- rebuilt for matplotlib-2.0.0

* Tue Jul 19 2016 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.4.0-5

- https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages

* Thu Feb 04 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.0-4

- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

* Sun Nov 29 2015 Igor Gnatenko <i.gnatenko.brain@gmail.com> - 0.4.0-3

- Use one directory for building

* Sat Nov 28 2015 Igor Gnatenko <i.gnatenko.brain@gmail.com> - 0.4.0-2

- Do not use obsolete py3dir

- Have only one binary

* Sun Nov 01 2015 Igor Gnatenko <i.gnatenko.brain@gmail.com> - 0.4.0-1

- Initial package