Tree - rpms/python-nipy - src.fedoraproject.org

rpms / python-nipy

Overview Files Commits Branches Forks Releases
Monitoring status:

Bugzilla Assignee:

Fedora:: ankursinha
EPEL:: ankursinha
Files

Commit: ca71c4dec418e440483ef0e17d9a86aa1d201289
Blob Blame History Raw
# All tests run
%bcond_without tests

%if 0%{?fedora} >= 33 || 0%{?rhel} >= 9
%global blaslib flexiblas
%else
%global blaslib openblas
%endif

%global modname nipy

%global _docdir_fmt %{name}

Name:           python-%{modname}
Version:        0.5.0
Release:        2%{?dist}
Summary:        Neuroimaging in Python FMRI analysis package

License:        BSD
URL:            http://nipy.org/nipy
Source0:        https://github.com/nipy/nipy/archive/%{version}/%{modname}-%{version}.tar.gz
BuildRequires:  git-core
BuildRequires:  gcc
BuildRequires:  %{blaslib}-devel

%description
Neuroimaging tools for Python.

The aim of NIPY is to produce a platform-independent Python environment for the
analysis of functional brain imaging data using an open development model.

%package -n python3-%{modname}
Summary:        %{summary}
BuildRequires:  python3-devel python3-setuptools
BuildRequires:  python3-numpy python3-scipy python3-nibabel python3-sympy
BuildRequires:  python3-Cython
# Test deps
%if %{with tests}
BuildRequires:  python3-nose
BuildRequires:  python3-six
BuildRequires:  python3-transforms3d
BuildRequires:  nipy-data
%endif
Requires:       python3-configobj
Requires:       python3-numpy
Requires:       python3-scipy
Requires:       python3-nibabel
Requires:       python3-sympy
Requires:       python3-six
Requires:       python3-transforms3d
Requires:       python3-matplotlib
Suggests:       nipy-data

%description -n python3-%{modname}
Neuroimaging tools for Python.

The aim of NIPY is to produce a platform-independent Python environment for the
analysis of functional brain imaging data using an open development model.

Python 3 version.

%prep
%autosetup -n %{modname}-%{version}

# Hard fix for bundled libs
find -type f -name '*.py' -exec sed -i \
  -e "s/from \.*externals.six/from six/"                             \
  -e "s/from nipy.externals.six/from six/"                           \
  -e "s/from nipy.externals import six/import six/"                  \
  -e "s/from nipy.externals.argparse/from argparse/"                 \
  -e "s/import nipy.externals.argparse as argparse/import argparse/" \
  -e "s/from \.*externals.transforms3d/from transforms3d/"           \
  {} ';'
sed -i -e "/config.add_subpackage(.externals.)/d" nipy/setup.py
rm -vrf nipy/externals/
rm -rf lib/lapack_lite/

find examples -type f -name '*.py' -exec sed -i '1{\@^#!/usr/bin/env python@d}' {} ';'

%build
export NIPY_EXTERNAL_LAPACK=1

%py3_build

%install
export NIPY_EXTERNAL_LAPACK=1

%py3_install

find %{buildroot}%{python3_sitearch} -name '*.so' -exec chmod 755 {} ';'

find %{buildroot}%{python3_sitearch}/%{modname}/ -name '*.py' -type f > tmp
while read lib
do
 sed -i '1{\@^#!/usr/bin/env python@d}' $lib
done < tmp
rm -f tmp

%check
%if %{with tests}
TESTING_DATA=(                                             \
nipy/testing/functional.nii.gz                             \
nipy/modalities/fmri/tests/spm_hrfs.mat                    \
nipy/modalities/fmri/tests/spm_dmtx.npz                    \
nipy/testing/anatomical.nii.gz                             \
nipy/algorithms/statistics/models/tests/test_data.bin      \
nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat  \
nipy/modalities/fmri/tests/spm_bases.mat                   \
nipy/labs/spatial_models/tests/some_blobs.nii              \
nipy/modalities/fmri/tests/cond_test1.txt                  \
nipy/modalities/fmri/tests/dct_5.txt                       \
nipy/modalities/fmri/tests/dct_10.txt                      \
nipy/modalities/fmri/tests/dct_100.txt                     \
)

# It seems like this is checking some internals of sympy that were changed:
%global skip_tests test_implemented_function

pushd build/lib.*-%{python3_version}
  for i in ${TESTING_DATA[@]}
  do
    mkdir -p ./${i%/*}/
    cp -a ../../$i ./$i
  done
  PATH="%{buildroot}%{_bindir}:$PATH" PYTHONPATH="%{buildroot}/%{python3_sitearch}" nosetests-%{python3_version} -v %{?skip_tests:-e %{skip_tests}}
popd
%endif

%files -n python3-%{modname}
%license LICENSE
%doc README.rst AUTHOR THANKS examples
%{_bindir}/nipy_3dto4d
%{_bindir}/nipy_4d_realign
%{_bindir}/nipy_4dto3d
%{_bindir}/nipy_diagnose
%{_bindir}/nipy_tsdiffana
%{python3_sitearch}/%{modname}*

%changelog
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild

* Sun Jul 04 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.5.0-1
- Update to latest release
- remove unneeded explicity provides
- remove s390x test exlusions
- Enable all tests

* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 0.4.2-13
- Rebuilt for Python 3.10

* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.2-12
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild

* Sun Aug 16 2020 Iñaki Úcar <iucar@fedoraproject.org> - 0.4.2-11
- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager

* Thu Aug 13 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.4.2-10
- Temporarily disable tests
- #1800845

* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.2-9
- Second attempt - Rebuilt for
  https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild

* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.2-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild

* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 0.4.2-7
- Rebuilt for Python 3.9

* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.2-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild

* Thu Oct 03 2019 Miro Hrončok <mhroncok@redhat.com> - 0.4.2-5
- Rebuilt for Python 3.8.0rc1 (#1748018)

* Mon Aug 19 2019 Miro Hrončok <mhroncok@redhat.com> - 0.4.2-4
- Rebuilt for Python 3.8

* Fri Jul 26 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild

* Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild

* Tue Aug 14 2018 Miro Hrončok <mhroncok@redhat.com> - 0.4.2-1
- Update to 0.4.2
- Remove python2 subpackage

* Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.1-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild

* Tue Jun 19 2018 Miro Hrončok <mhroncok@redhat.com> - 0.4.1-6
- Rebuilt for Python 3.7

* Mon Mar 26 2018 Iryna Shcherbina <ishcherb@redhat.com> - 0.4.1-5
- Update Python 2 dependency declarations to new packaging standards
  (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3)

* Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild

* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild

* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild

* Sun Feb 12 2017 Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 0.4.1-1
- Update to latest version

* Sat Feb 11 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.0-8
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild

* Mon Dec 19 2016 Miro Hrončok <mhroncok@redhat.com> - 0.4.0-7
- Rebuild for Python 3.6

* Sat Oct 15 2016 Peter Robinson <pbrobinson@fedoraproject.org> - 0.4.0-6
- rebuilt for matplotlib-2.0.0

* Tue Jul 19 2016 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.4.0-5
- https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages

* Thu Feb 04 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.4.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild

* Sun Nov 29 2015 Igor Gnatenko <i.gnatenko.brain@gmail.com> - 0.4.0-3
- Use one directory for building

* Sat Nov 28 2015 Igor Gnatenko <i.gnatenko.brain@gmail.com> - 0.4.0-2
- Do not use obsolete py3dir
- Have only one binary

* Sun Nov 01 2015 Igor Gnatenko <i.gnatenko.brain@gmail.com> - 0.4.0-1
- Initial package
rpms / python-nipy

Source Code

Files
