%global modname nipy %global _docdir_fmt %{name} Name: python-%{modname} Version: 0.4.2 Release: 2%{?dist} Summary: Neuroimaging in Python FMRI analysis package License: BSD URL: http://nipy.org/nipy Source0: https://github.com/nipy/nipy/archive/%{version}/%{modname}-%{version}.tar.gz BuildRequires: git-core BuildRequires: gcc BuildRequires: lapack-devel blas-devel atlas-devel %description Neuroimaging tools for Python. The aim of NIPY is to produce a platform-independent Python environment for the analysis of functional brain imaging data using an open development model. %package -n python3-%{modname} Summary: %{summary} %{?python_provide:%python_provide python3-%{modname}} BuildRequires: python3-devel python3-setuptools BuildRequires: python3-numpy python3-scipy python3-nibabel python3-sympy BuildRequires: python3-Cython # Test deps BuildRequires: python3-nose BuildRequires: python3-six BuildRequires: python3-transforms3d BuildRequires: nipy-data Requires: python3-configobj Requires: python3-numpy Requires: python3-scipy Requires: python3-nibabel Requires: python3-sympy Requires: python3-six Requires: python3-transforms3d Requires: python3-matplotlib Suggests: nipy-data %description -n python3-%{modname} Neuroimaging tools for Python. The aim of NIPY is to produce a platform-independent Python environment for the analysis of functional brain imaging data using an open development model. Python 3 version. %prep %autosetup -n %{modname}-%{version} -p1 -Sgit # Hard fix for bundled libs find -type f -name '*.py' -exec sed -i \ -e "s/from \.*externals.six/from six/" \ -e "s/from nipy.externals.six/from six/" \ -e "s/from nipy.externals import six/import six/" \ -e "s/from nipy.externals.argparse/from argparse/" \ -e "s/import nipy.externals.argparse as argparse/import argparse/" \ -e "s/from \.*externals.transforms3d/from transforms3d/" \ {} ';' find scripts/ -type f -exec sed -i \ -e "s/from nipy.externals.argparse/from argparse/" \ -e "s/import nipy.externals.argparse as argparse/import argparse/" \ {} ';' sed -i -e "/config.add_subpackage(.externals.)/d" nipy/setup.py rm -vrf nipy/externals/ rm -rf lib/lapack_lite/ find examples -type f -name '*.py' -exec sed -i '1{\@^#!/usr/bin/env python@d}' {} ';' %build export NIPY_EXTERNAL_LAPACK=1 %py3_build %install export NIPY_EXTERNAL_LAPACK=1 %py3_install find %{buildroot}%{python3_sitearch} -name '*.so' -exec chmod 755 {} ';' find %{buildroot}%{python3_sitearch}/%{modname}/ -name '*.py' -type f > tmp while read lib do sed -i '1{\@^#!/usr/bin/env python@d}' $lib done < tmp rm -f tmp %check TESTING_DATA=( \ nipy/testing/functional.nii.gz \ nipy/modalities/fmri/tests/spm_hrfs.mat \ nipy/modalities/fmri/tests/spm_dmtx.npz \ nipy/testing/anatomical.nii.gz \ nipy/algorithms/statistics/models/tests/test_data.bin \ nipy/algorithms/diagnostics/tests/data/tsdiff_results.mat \ nipy/modalities/fmri/tests/spm_bases.mat \ nipy/labs/spatial_models/tests/some_blobs.nii \ nipy/modalities/fmri/tests/cond_test1.txt \ nipy/modalities/fmri/tests/dct_5.txt \ nipy/modalities/fmri/tests/dct_10.txt \ nipy/modalities/fmri/tests/dct_100.txt \ ) # It seems like this is checking some internals of sympy that were changed: %global skip_tests test_implemented_function %ifarch s390x # https://bugzilla.redhat.com/show_bug.cgi?id=1605792#c14 %global skip_tests %{skip_tests} -e test_mahalanobis2 -e test_2D -e test_agreement -e test_spectral_decomposition %endif pushd build/lib.*-%{python3_version} for i in ${TESTING_DATA[@]} do mkdir -p ./${i%/*}/ cp -a ../../$i ./$i done PATH="%{buildroot}%{_bindir}:$PATH" nosetests-%{python3_version} -v %{?skip_tests:-e %{skip_tests}} popd %files -n python3-%{modname} %license LICENSE %doc README.rst AUTHOR THANKS examples %{_bindir}/nipy_3dto4d %{_bindir}/nipy_4d_realign %{_bindir}/nipy_4dto3d %{_bindir}/nipy_diagnose %{_bindir}/nipy_tsdiffana %{python3_sitearch}/%{modname}* %changelog * Sat Feb 02 2019 Fedora Release Engineering - 0.4.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Tue Aug 14 2018 Miro Hrončok - 0.4.2-1 - Update to 0.4.2 - Remove python2 subpackage * Sat Jul 14 2018 Fedora Release Engineering - 0.4.1-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Tue Jun 19 2018 Miro Hrončok - 0.4.1-6 - Rebuilt for Python 3.7 * Mon Mar 26 2018 Iryna Shcherbina - 0.4.1-5 - Update Python 2 dependency declarations to new packaging standards (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3) * Fri Feb 09 2018 Fedora Release Engineering - 0.4.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Thu Aug 03 2017 Fedora Release Engineering - 0.4.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Thu Jul 27 2017 Fedora Release Engineering - 0.4.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Sun Feb 12 2017 Zbigniew Jędrzejewski-Szmek - 0.4.1-1 - Update to latest version * Sat Feb 11 2017 Fedora Release Engineering - 0.4.0-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Mon Dec 19 2016 Miro Hrončok - 0.4.0-7 - Rebuild for Python 3.6 * Sat Oct 15 2016 Peter Robinson - 0.4.0-6 - rebuilt for matplotlib-2.0.0 * Tue Jul 19 2016 Fedora Release Engineering - 0.4.0-5 - https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages * Thu Feb 04 2016 Fedora Release Engineering - 0.4.0-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Sun Nov 29 2015 Igor Gnatenko - 0.4.0-3 - Use one directory for building * Sat Nov 28 2015 Igor Gnatenko - 0.4.0-2 - Do not use obsolete py3dir - Have only one binary * Sun Nov 01 2015 Igor Gnatenko - 0.4.0-1 - Initial package