# Run test suites upstream runs by default. Tests disabled here are

# optional and not run when running `test.py` without any arguments.

# Tests are listed in the order they appear in `test.py`.

# unit tests for pynwb package

%bcond test_pynwb             1

# integration tests

%bcond test_integration       1

# example tests

# Some tests require network, others additional unavailable modules

%bcond test_example           0

# example tests with ros3 streaming

# Internet access required (automatically disabled without it)

%bcond test_example_ros3      0

# backwards compatibility tests

%bcond test_backwards         1

# example tests and validation tests on example NWB files

%bcond test_validate_examples 0

# ros3 streaming tests

# Internet access required (automatically disabled without it)

%bcond test_ros3              0

# tests on pynwb.validate

# some tests fail for unknown reasons (more since 2.7.0)

%bcond test_validation_module 0

Name:           python-pynwb

Version:        2.7.0

Release:        %autorelease

Summary:        Package for working with Neurodata stored in the NWB format

# The entire source is BSD-3-Clause-LBNL, except:

#

# Unlicense:

#   - versioneer.py, a bundled and amalgamated copy of python3dist(versioneer),

#     is not distributed in the binary RPMs, but the _version.py it generates

#     is, and shares the same license

License:        BSD-3-Clause-LBNL AND Unlicense

URL:            https://github.com/NeurodataWithoutBorders/pynwb

# Use the pypi tar because GitHub tar does not include the required git-submodules

Source:         %{pypi_source pynwb}

# Exclude artifacts from wheel (and sdist)

# https://github.com/NeurodataWithoutBorders/pynwb/pull/1902

Patch:          %{url}/pull/1902.patch

BuildArch:      noarch

%global desc %{expand:

PyNWB is a Python package for working with NWB files. It provides a high-level

API for efficiently working with Neurodata stored in the NWB format.

https://pynwb.readthedocs.io/en/latest/}

%description %{desc}

%package -n python3-pynwb

Summary:        %{summary}

BuildRequires:  python3-devel

BuildRequires:  python3-pytest

# Required for tests, not listed in requirements*.txt

BuildRequires:  python3-matplotlib

%description -n python3-pynwb %{desc}

%prep

%autosetup -n pynwb-%{version} -p1

# https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_linters

sed -r -i 's@"coverage", "run", "-p"@"%{python3}"@' \

    tests/validation/test_validate.py

sed -r -i 's/==.*//' requirements.txt | tee requirements-unpinned.txt

#sed -i -e "s/h5py>.*'/h5py'/" -e "s/numpy>.*'/numpy'/" -e "s/pandas>.*'/pandas'/" setup.py

# TODO: Why does this happen? It seems like it is an issue with our test

# environment rather than a real bug.

#

# AssertionError: "<frozen runpy>:128:

#     RuntimeWarning: 'pyn[151 chars]ur\n" != ''

# - <frozen runpy>:128: RuntimeWarning: 'pynwb.validate' found in sys.modules

#     after import of package 'pynwb', but prior to execution of

#     'pynwb.validate'; this may result in unpredictable behaviour

sed -r -i '1{s/^/from unittest import skip\n/}' \

    tests/validation/test_validate.py

for n in \

    test_validate_file_cached \

    test_validate_file_cached_extension \

    test_validate_file_cached_extension_pass_ns \

    test_validate_file_cached_ignore \

    test_validate_file_list_namespaces_core \

    test_validate_file_list_namespaces_extension

do

  sed -r -i \

      "s/^([[:blank:]]*)(def $n\()/\1@skip('Re-import issues')\n\1\2/" \

      tests/validation/test_validate.py

done

%generate_buildrequires

%pyproject_buildrequires requirements-unpinned.txt

%build

%pyproject_wheel

%install

%pyproject_install

%pyproject_save_files pynwb

%check

# Generate test files

%{py3_test_envvars} %{python3} src/pynwb/testing/make_test_files.py

# See skips added in %%prep.

%{py3_test_envvars} %{python3} test.py \

%if %{with test_backwards}

    --backwards \

%endif

%if %{with test_example}

    --example \

%endif

%if %{with test_example_ros3}

    --example-ros3 \

%endif

%if %{with test_integration}

    --integration \

%endif

%if %{with test_pynwb}

    --pynwb \

%endif

%if %{with test_ros3}

    --ros3 \

%endif

%if %{with test_validate_examples}

    --validate-examples \

%endif

%if %{with test_validation_module}

    --validation-module \

%endif

    --verbose

%files -n python3-pynwb -f %{pyproject_files}

%license license.txt

%doc README.rst

%changelog

%autochangelog