diff --git a/.cvsignore b/.cvsignore index 3c27903..c62e948 100644 --- a/.cvsignore +++ b/.cvsignore @@ -1 +1 @@ -samtools-0.1.5c.tar.bz2 +samtools-0.1.7a.tar.bz2 diff --git a/import.log b/import.log index 29d62f3..4bbd9d9 100644 --- a/import.log +++ b/import.log @@ -1 +1,2 @@ samtools-0_1_5c-3_fc10:HEAD:samtools-0.1.5c-3.fc10.src.rpm:1247425812 +samtools-0_1_7a-1_fc11:F-12:samtools-0.1.7a-1.fc11.src.rpm:1259569695 diff --git a/samtools-0.1.5c-compilefix.patch b/samtools-0.1.5c-compilefix.patch deleted file mode 100644 index aa76f69..0000000 --- a/samtools-0.1.5c-compilefix.patch +++ /dev/null @@ -1,11 +0,0 @@ -diff -up samtools-0.1.5c/misc/Makefile.compilefix samtools-0.1.5c/misc/Makefile ---- samtools-0.1.5c/misc/Makefile.compilefix 2009-07-11 15:33:04.000000000 +0200 -+++ samtools-0.1.5c/misc/Makefile 2009-07-11 15:33:22.000000000 +0200 -@@ -1,6 +1,6 @@ - CC= gcc - CXX= g++ --CFLAGS= -g -Wall -O2 -m64 #-arch ppc -+CFLAGS= -g -Wall -O2 #-m64 #-arch ppc - CXXFLAGS= $(CFLAGS) - DFLAGS= -D_FILE_OFFSET_BITS=64 - OBJS= diff --git a/samtools.spec b/samtools.spec index 31bb2b1..f5d274f 100644 --- a/samtools.spec +++ b/samtools.spec @@ -1,13 +1,12 @@ Name: samtools -Version: 0.1.5c -Release: 4%{?dist} +Version: 0.1.7a +Release: 1%{?dist} Summary: Tools for nucleotide sequence alignments in the SAM format Group: Applications/Engineering License: MIT URL: http://samtools.sourceforge.net/ Source0: http://downloads.sourceforge.net/%{name}/%{name}-%{version}.tar.bz2 -Patch0: samtools-0.1.5c-compilefix.patch BuildRoot: %(mktemp -ud %{_tmppath}/%{name}-%{version}-%{release}-XXXXXX) BuildRequires: zlib-devel >= 1.2.3 @@ -21,7 +20,6 @@ manipulating alignments in the SAM format. %prep %setup -q -%patch0 -p1 -b .compilefix %build @@ -41,9 +39,10 @@ mkdir -p %{buildroot}%{_mandir}/man1/ cp -p samtools.1.gz %{buildroot}%{_mandir}/man1/ cd misc/ -install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl \ - maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl samtools.pl \ - soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl %{buildroot}%{_bindir} +install -p blast2sam.pl bowtie2sam.pl export2sam.pl interpolate_sam.pl \ + maq2sam-long maq2sam-short md5fa md5sum-lite novo2sam.pl sam2vcf.pl \ + samtools.pl soap2sam.pl wgsim wgsim_eval.pl zoom2sam.pl \ + %{buildroot}%{_bindir} %clean @@ -52,12 +51,15 @@ rm -rf %{buildroot} %files %defattr(-,root,root,-) -%doc AUTHORS ChangeLog COPYING INSTALL NEWS source.dot examples/ +%doc AUTHORS ChangeLog COPYING INSTALL NEWS examples/ samtools.txt %{_bindir}/* %{_mandir}/man1/* %changelog +* Mon Nov 30 2009 Rasmus Ory Nielsen - 0.1.7a-1 +- Updated to 0.1.7a. + * Sun Jul 26 2009 Fedora Release Engineering - 0.1.5c-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild diff --git a/sources b/sources index d58f549..40fd4ce 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -62551fbad3f7c63c52fad99c3baf8580 samtools-0.1.5c.tar.bz2 +5e5aed8f0e0ec0009a3f0bb3e639c18b samtools-0.1.7a.tar.bz2