#!/bin/bash

set -e

set -x

umask 0022

VERSION=${VERSION:-40.1}

FEDORA_TAR_VERSION=${VERSION}

REPONAME=ugene

TARNAME=${REPONAME}

SOURCE_TOP_URL=https://github.com/ugeneunipro/${REPONAME}/archive/

CURRENT_DIR=$(pwd)

TMPDIR=$(mktemp -d /var/tmp/${REPONAME}-XXXXXX)

pushd $TMPDIR

TARBALL_NAME=${TARNAME}-${FEDORA_TAR_VERSION}.tar.gz

SOURCE_URL=${SOURCE_TOP_URL}/${VERSION}/${TARBALL_NAME}

wget -N ${SOURCE_URL}

rm -rf ${TARNAME}-${VERSION}

tar xzf ${TARBALL_NAME}

pushd ${TARNAME}-${VERSION}

echo "Removing nonfree code"

for NONFREE in \

	src/plugins_3rdparty/psipred

do

	rm -rf $NONFREE

done

echo "done"

popd

tar czf ${TARNAME}-free-${FEDORA_TAR_VERSION}.tar.gz ${TARNAME}-${VERSION}/

mv ${TARNAME}-free-${FEDORA_TAR_VERSION}.tar.gz ${CURRENT_DIR}/

popd

rm -rf $TMPDIR