Name: vcftools Version: 0.1.16 Release: 18%{?dist} Summary: VCF file manipulation tools License: GPLv3 URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz BuildRequires: make BuildRequires: gcc-c++ BuildRequires: perl-generators BuildRequires: perl-interpreter BuildRequires: zlib-devel %description A program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. %prep %autosetup %build %configure --with-pmdir=%(perl -e 'print $ARGV[0] =~ s{\A\Q$ARGV[1]\E/}{}r' \ %{perl_vendorlib} %{_exec_prefix}) %make_build %check make check %install %make_install %files %doc README.md %license LICENSE %{_bindir}/vcf-compare %{_bindir}/fill-aa %{_bindir}/fill-an-ac #%%{_bindir}/fill-rsIDs %{_bindir}/vcf-merge %{_bindir}/vcf-query %{_bindir}/vcf-annotate %{_bindir}/vcf-concat %{_bindir}/vcf-convert %{_bindir}/vcf-isec %{_bindir}/vcf-sort %{_bindir}/vcf-stats %{_bindir}/vcf-subset %{_bindir}/vcf-to-tab %{_bindir}/vcf-validator %{_bindir}/fill-fs %{_bindir}/fill-ref-md5 %{_bindir}/vcf-consensus %{_bindir}/vcf-contrast %{_bindir}/vcf-fix-ploidy %{_bindir}/vcf-indel-stats %{_bindir}/vcf-phased-join %{_bindir}/vcf-shuffle-cols %{_bindir}/vcf-tstv %{_bindir}/vcf-fix-newlines %{_bindir}/vcftools %{perl_vendorlib}/FaSlice.pm %{perl_vendorlib}/Vcf.pm %{perl_vendorlib}/VcfStats.pm %{_mandir}/man1/vcftools.1.gz %changelog * Sat Jan 27 2024 Fedora Release Engineering - 0.1.16-18 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Sat Jul 22 2023 Fedora Release Engineering - 0.1.16-17 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Sat Jan 21 2023 Fedora Release Engineering - 0.1.16-16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Thu Sep 01 2022 Filipe Rosset - 0.1.16-15 - spec cleanup and modernization * Sat Jul 23 2022 Fedora Release Engineering - 0.1.16-14 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Mon May 30 2022 Jitka Plesnikova - 0.1.16-13 - Perl 5.36 rebuild * Sat Jan 22 2022 Fedora Release Engineering - 0.1.16-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Fri Jul 23 2021 Fedora Release Engineering - 0.1.16-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri May 21 2021 Jitka Plesnikova - 0.1.16-10 - Perl 5.34 rebuild * Wed Jan 27 2021 Fedora Release Engineering - 0.1.16-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Wed Jul 29 2020 Fedora Release Engineering - 0.1.16-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Fri Jun 26 2020 Jitka Plesnikova - 0.1.16-7 - Perl 5.32 re-rebuild of bootstrapped packages * Mon Jun 22 2020 Jitka Plesnikova - 0.1.16-6 - Perl 5.32 rebuild * Fri Jan 31 2020 Fedora Release Engineering - 0.1.16-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Sat Jul 27 2019 Fedora Release Engineering - 0.1.16-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Mon Jun 17 2019 Petr Pisar - 0.1.16-3 - Install Perl modules into a vendor Perl path * Sun Feb 03 2019 Fedora Release Engineering - 0.1.16-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Sun Aug 05 2018 Adam Huffman - 0.1.16-1 - Update to latest upstream release 0.1.16 * Sat Jul 14 2018 Fedora Release Engineering - 0.1.15-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Mon Apr 09 2018 Filipe Rosset - 0.1.15-6 - added gcc-c++ as BR * Fri Feb 09 2018 Fedora Release Engineering - 0.1.15-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Thu Aug 03 2017 Fedora Release Engineering - 0.1.15-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild * Thu Jul 27 2017 Fedora Release Engineering - 0.1.15-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Mon May 15 2017 Fedora Release Engineering - 0.1.15-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild * Fri Apr 21 2017 Filipe Rosset - 0.1.15-1 - Update to latest upstream release 0.1.15 * Sat Feb 11 2017 Fedora Release Engineering - 0.1.14-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Tue Nov 08 2016 Filipe Rosset - 0.1.14-1 - Update to latest upstream release 0.1.14 - Fix FTBFS rhbz #1308219 - Fix rhbz #1365319 thanks to Aram Minasyan - Spec modernization/clean up, new URLs from GitHub * Fri Feb 05 2016 Fedora Release Engineering - 0.1.11-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Fri Jun 19 2015 Fedora Release Engineering - 0.1.11-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild * Sat May 02 2015 Kalev Lember - 0.1.11-7 - Rebuilt for GCC 5 C++11 ABI change * Mon Aug 18 2014 Fedora Release Engineering - 0.1.11-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild * Sun Jun 08 2014 Fedora Release Engineering - 0.1.11-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild * Sat Aug 03 2013 Petr Pisar - 0.1.11-4 - Perl 5.18 rebuild * Tue Jul 30 2013 Peter Robinson 0.1.11-3 - Use distro CFLAGS (fix FTBFS on ARM) * Thu Jul 18 2013 Petr Pisar - 0.1.11-2 - Perl 5.18 rebuild * Wed Jul 03 2013 - 0.1.11-1 - Update to latest upstream release 0.1.11 * Fri Feb 15 2013 Fedora Release Engineering - 0.1.9-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild * Sun Jul 29 2012 - 0.1.9-1 - Update to 0.1.9 - Remove perl patch that's no longer needed * Thu Jan 5 2012 Adam Huffman - 0.1.7-1 - update to upstream release 0.1.7 - remove fill-rsIDs - update Perl makefile patch * Sun Jul 31 2011 Adam Huffman - 0.1.6-1 - update to 0.1.6 * Tue May 3 2011 Adam Huffman - 0.1.5-2 - minor fix to Jack's Perl patch - permissions fix - hardcoded path fix - cleaner Makefile fix * Sun May 1 2011 Jack Tanner - 0.1.5-1 - bump to 0.1.5 - rename compare-vcf, merge-vcf, and query-vcf to vcf-compare, vcf-merge, and vcf-query - add VcfStats.pm to perl export - patch perl/Makefile to export VcfStats.pm * Mon Mar 21 2011 Adam Huffman - 0.1.4a-1 - initial version - fix CPPFLAGS - fix hardcoded installation location