Name:           PyMca

Version:        5.9.2

Release:        %autorelease

Summary:        X-ray Fluorescence Toolkit

License:        GPL-2.0-or-later

URL:            http://pymca.sourceforge.net/

#  https://github.com/vasole/pymca

%if 0

Original source: http://downloads.sourceforge.net/sourceforge/pymca/pymca%%{version}-src.tgz

However it bundles a copy of the "sift" module which implements a patented algorithm.

The algorithm can be used for non-commercial research purposes ONLY. Per:

http://fedoraproject.org/wiki/Packaging:SourceURL#When_Upstream_uses_Prohibited_Code

we must remove them before uploading:

  ./getsources.sh [%{version}]

%endif

Source0:        pymca-%{version}-filtered.tar.xz

Source1:        PyMca.desktop

Source2:        edfviewer.desktop

Source3:        elementsinfo.desktop

Source4:        mca2edf.desktop

Source5:        peakidentifier.desktop

Source6:        pymcabatch.desktop

Source7:        pymcapostbatch.desktop

Source8:        pymcaroitool.desktop

BuildRequires:  gcc

BuildRequires:  desktop-file-utils

BuildRequires:  ImageMagick

BuildRequires:  python3-devel

BuildRequires:  python3-setuptools

BuildRequires:  python3dist(cython)

BuildRequires:  python3dist(numpy)

BuildRequires:  python3dist(h5py)

BuildRequires:  python3dist(pyqt5)

BuildRequires:  python3dist(fisx)

BuildRequires:  python3dist(matplotlib)

BuildRequires:  python3-matplotlib-qt5

BuildRequires:  mesa-libGL-devel

BuildRequires:  mesa-libGLU-devel

BuildRequires:  qhull-devel

BuildRequires:  glibc-langpack-pl

Requires:       hicolor-icon-theme

Requires:       %{name}-data = %{version}-%{release}

# Dependency on the graphical toolkit is not autogenerated because many different

# ones are supported, https://bugzilla.redhat.com/show_bug.cgi?id=2084297.

Requires:       python3dist(pyqt5)

Requires:       python3-matplotlib-qt5

%description

PyMCA provides a graphical interface for multi-channel analyzer spectra

visualization and analysis. PyMca can display spectra from a file or directly

from SPEC during acquisitions.

%package        data

Summary:        Data files for %{name}

BuildArch:      noarch

%description    data

This package contains photon interaction data/elements data for %{name}.

%prep

%autosetup -p1 -n pymca-%{version}

# Fix wrong shebang of pymcapostbatch.

sed -i "s|!python|!%python3|g" PyMca5/scripts/pymcapostbatch

%build

# Need to define manually. Note using pkg-config to export the cflags

# is not identified by the setup.py script as it requires non-blank

# stdin for both CFLAGS/LDFLAGS, so we manually define the CFLAGS.

QHULL_CFLAGS="-I%{_includedir}/libqhull" \

QHULL_LIBS="-lqhull" \

SPECFILE_USE_GNU_SOURCE=1 \

PYMCA_DATA_DIR=/usr/share/PyMca \

PYMCA_DOC_DIR=/usr/share/doc/PyMca \

%py3_build

%install

PYMCA_DATA_DIR=/usr/share/PyMca \

PYMCA_DOC_DIR=/usr/share/doc/PyMca \

%py3_install

# Install desktop file.

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:1}

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:2}

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:3}

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:4}

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:5}

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:6}

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:7}

desktop-file-install --dir=%{buildroot}%{_datadir}/applications %{S:8}

# Merge applications into one software center item

mkdir -p %{buildroot}%{_datadir}/appdata

cat >%{buildroot}%{_datadir}/appdata/edfviewer.appdata.xml <

<component type="desktop">

  <metadata_license>CC0-1.0</metadata_license>

  <id>edfviewer.desktop</id>

  <metadata>

    <value key="X-Merge-With-Parent">PyMca.desktop</value>

  </metadata>

</component>

EOF

cat >%{buildroot}%{_datadir}/appdata/elementsinfo.appdata.xml <

<component type="desktop">

  <metadata_license>CC0-1.0</metadata_license>

  <id>elementsinfo.desktop</id>

  <metadata>

    <value key="X-Merge-With-Parent">PyMca.desktop</value>

  </metadata>

</component>

EOF

cat >%{buildroot}%{_datadir}/appdata/mca2edf.appdata.xml <

<component type="desktop">

  <metadata_license>CC0-1.0</metadata_license>

  <id>mca2edf.desktop</id>

  <metadata>

    <value key="X-Merge-With-Parent">PyMca.desktop</value>

  </metadata>

</component>

EOF

cat >%{buildroot}%{_datadir}/appdata/peakidentifier.appdata.xml <

<component type="desktop">

  <metadata_license>CC0-1.0</metadata_license>

  <id>peakidentifier.desktop</id>

  <metadata>

    <value key="X-Merge-With-Parent">PyMca.desktop</value>

  </metadata>

</component>

EOF

cat >%{buildroot}%{_datadir}/appdata/pymcabatch.appdata.xml <

<component type="desktop">

  <metadata_license>CC0-1.0</metadata_license>

  <id>pymcabatch.desktop</id>

  <metadata>

    <value key="X-Merge-With-Parent">PyMca.desktop</value>

  </metadata>

</component>

EOF

cat >%{buildroot}%{_datadir}/appdata/pymcapostbatch.appdata.xml <

<component type="desktop">

  <metadata_license>CC0-1.0</metadata_license>

  <id>pymcapostbatch.desktop</id>

  <metadata>

    <value key="X-Merge-With-Parent">PyMca.desktop</value>

  </metadata>

</component>

EOF

cat >%{buildroot}%{_datadir}/appdata/pymcaroitool.appdata.xml <

<component type="desktop">

  <metadata_license>CC0-1.0</metadata_license>

  <id>pymcaroitool.desktop</id>

  <metadata>

    <value key="X-Merge-With-Parent">PyMca.desktop</value>

  </metadata>

</component>

EOF

# Convert to various sizes, via the 256x256 source.

for size in 192x192 128x128 96x96 72x72 64x64 48x48 40x40 36x36 32x32 26x26 24x24 22x22 16x16 ; do

    install -pdm755 \

        %{buildroot}%{_datadir}/icons/hicolor/${size}/apps

    convert -resize ${size} icons/PyMca_256x256.png \

        %{buildroot}%{_datadir}/icons/hicolor/${size}/apps/%{name}.png

done

# Get rid of spurious executable rights.

find %{buildroot}%{python3_sitearch}/PyMca5/ -type f -exec chmod 644 {} +

find %{buildroot}%{python3_sitearch}/PyMca5/ -name *.so -exec chmod 755 {} +

# Get rid of /usr/bin/env in libraries.

find %{buildroot}%{python3_sitearch}/PyMca5 -type f -name '*.py' \

     -exec sed -i '/\/usr\/bin\/env/d' {} + \

     -exec touch -r setup.py {} +

%check

PYTHONPATH=%{buildroot}%{python3_sitearch} \

PYMCA_DATA_DIR=%{buildroot}/usr/share/PyMca \

PYMCA_DOC_DIR=%{buildroot}/usr/share/doc/PyMca \

QT_QPA_PLATFORM=offscreen \

LC_ALL=pl_PL.utf8 \

%python3 PyMca5/tests/TestAll.py

# Test results are ingored. In F34 rawhide mock:

# ERROR: testHdf5Uri (ConfigDictTest.testConfigDict)

# FAIL: testNxExtStringAttribute (NexusUtilsTest.testNexusUtils)

# FAIL: testNxExtStringDataset (NexusUtilsTest.testNexusUtils)

# FAIL: testNxStringDataset (NexusUtilsTest.testNexusUtils)

%files

%license LICENSE.GPL

%doc changelog.txt README.rst

%{_bindir}/edfviewer

%{_bindir}/elementsinfo

%{_bindir}/mca2edf

%{_bindir}/peakidentifier

%{_bindir}/pymca*

%{_bindir}/rgbcorrelator

%{_datadir}/appdata/*.appdata.xml

%{_datadir}/applications/*.desktop

%{_datadir}/icons/hicolor/*x*/apps/%{name}.png

%{_mandir}/man1/*.1*

%{python3_sitearch}/PyMca5/

%{python3_sitearch}/PyMca5-%{version}-py%{python3_version}.egg-info

%exclude %{_pkgdocdir}

%files data

%{_datadir}/%{name}/

%{_pkgdocdir}/

%changelog

%autochangelog