%global packname Biostrings
%global Rvers 4.0.0
%global IRange 2.30.1
Name: R-%{packname}
Version: 2.64.1
Release: 8%{dist}
Summary: String objects representing biological sequences
License: Artistic-2.0
URL: http://bioconductor.org/packages/release/bioc/html/Biostrings.html
Source0: http://bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz
BuildRequires: R-devel >= %{Rvers} tex(latex) R-methods R-utils R-IRanges-devel >= %{IRange}
BuildRequires: R-XVector-devel >= 0.29.2, R-BiocGenerics >= 0.37.0, R-S4Vectors-devel >= 0.27.12
BuildRequires: R-graphics, R-methods, R-stats, R-utils, R-grDevices, R-crayon, R-GenomeInfoDb
%description
Memory efficient string containers, string matching algorithms, and other
utilities, for fast manipulation of large biological sequences or set of
sequences.
%package devel
Summary: Development files for %{name}
Requires: %{name} = %{version}-%{release}
%description devel
The %{name}-devel package contains libraries and header files for
developing applications that use %{name}.
%prep
%setup -q -c -n %{packname}
%build
%install
rm -rf %{buildroot}
# architecture dependent package
mkdir -p %{buildroot}%{_libdir}/R/library
R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library
# Clean up in advance of check
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -rf %{buildroot}%{_libdir}/R/library/R.css
# Empty file
rm -f %{buildroot}%{_libdir}/R/library/%{packname}/doc/GenomeSearching.R
%check
# Requires for R-BSgenome which cannot build without R-Biostring
#%%{_bindir}/R CMD check %%{packname}
%files
#i386 arch
%dir %{_libdir}/R/library/%{packname}/
%doc %{_libdir}/R/library/%{packname}/doc
%{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/NEWS
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/extdata
%{_libdir}/R/library/%{packname}/data
%{_libdir}/R/library/%{packname}/libs
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/unitTests/
%files devel
%{_libdir}/R/library/%{packname}/include
%changelog
* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 2.64.1-8
- R-maint-sig mass rebuild
* Sat Apr 20 2024 Miroslav Suchý <msuchy@redhat.com> - 2.64.1-7
- convert license to SPDX
* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.64.1-6
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.64.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.64.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 2.64.1-3
- R-maint-sig mass rebuild
* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.64.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Sat Sep 3 2022 Tom Callaway <spot@fedoraproject.org> - 2.64.1-1
- update to 2.64.1
- rebuild for R 4.2.1
* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.60.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.60.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.60.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Wed Jun 16 2021 Tom Callaway <spot@fedoraproject.org> - 2.60.1-1
- update to 2.60.1
- Rebuilt for R 4.1.0
* Wed Feb 3 2021 Tom Callaway <spot@fedoraproject.org> - 2.58.0-1
- update to 2.58.0
* Mon Jan 25 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.56.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Mon Jun 8 2020 Tom Callaway <spot@fedoraproject.org> - 2.56.0-1
- update to 2.56.0
- rebuild for R 4
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.54.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Mon Nov 4 2019 Tom Callaway <spot@fedoraproject.org> - 2.54.0-1
- update to 2.54.0
* Mon Aug 12 2019 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 2.48.0-5
- Remove explicit dependencies provided by automatic dependency generator
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.48.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.48.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.48.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
* Wed May 16 2018 Tom Callaway <spot@fedoraproject.org> - 2.48.0-1
- update to 2.48.0
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.44.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
* Wed May 24 2017 Tom Callaway <spot@fedoraproject.org> - 2.44.0-1
- update to 2.44.0
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 2.38.2-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 2.38.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Mon Dec 7 2015 Tom Callaway <spot@fedoraproject.org> - 2.38.2-1
- update to 2.38.2
* Tue Jun 16 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.36.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Fri May 29 2015 Tom Callaway <spot@fedoraproject.org> - 2.36.1-1
- update to 2.36.1, drop doc off DESCRIPTION
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.32.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Mon Jun 9 2014 Tom Callaway <spot@fedoraproject.org> - 2.32.0-1
- update to 2.32.0
* Fri Jun 06 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.30.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Mon Jan 27 2014 pingou <pingou@pingoured.fr> 2.30.1-1
- Update to version 2.30.1
* Fri Aug 02 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.28.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Sun Apr 07 2013 pingou <pingou@pingoured.fr> 2.28.0-1
- Update to version 2.28.0
* Wed Feb 13 2013 pingou <pingou@pingoured.fr> 2.26.3-1
- Update to version 2.26.3
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.26.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Tue Nov 27 2012 pingou <pingou@pingoured.fr> 2.26.2-1
- Update to version 2.26.2
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.22.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.22.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Wed Nov 9 2011 Tom Callaway <spot@fedoraproject.org> 2.22.0-1
- update to 2.22.0
* Sat Jul 02 2011 pingou <pingou@pingoured.fr> 2.20.1-1
- Update to version 2.20.1
* Tue Mar 15 2011 pingou <pingou@pingoured.fr> 2.18.4-1
- Update to version 2.18.4
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.18.2-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Mon Dec 13 2010 pingou <pingou@pingoured.fr> 2.18.2-1
- Update to version 2.18.2
* Tue Oct 26 2010 pingou <pingou@pingoured.fr> 2.18.0-1
- Update to version 2.18.0
* Tue Sep 07 2010 pingou <pingou@pingoured.fr> 2.16.9-1
- Update to version 2.16.9
* Thu Jul 01 2010 pingou <pingou@pingoured.fr> 2.16.6-1
- Update to version 2.16.6
- Update the url and source to a more stable format
* Sat Jun 05 2010 pingou <pingou@pingoured.fr> 2.16.4-1
- Update to version 2.16.4
- Update to R-2.11.0
- Remove the post/postun scriplet
- Update R and BR to R-core and R-devel
* Tue Mar 02 2010 pingou <pingou@pingoured.fr> 2.14.12-1
- Update to 2.14.12
* Thu Jan 14 2010 pingou <pingou@pingoured.fr> 2.14.10-1
- Update to 2.14.10
* Thu Dec 17 2009 pingou <pingou@pingoured.fr> 2.14.9-2
- Update dependancy to IRanges 1.4.8
* Thu Dec 17 2009 pingou <pingou@pingoured.fr> 2.14.9-1
- Update to 2.14.9
* Fri Dec 04 2009 pingou <pingou@pingoured.fr> 2.14.7-2
- Remove the folder R-ex
* Sat Nov 21 2009 pingou <pingou@pingoured.fr> 2.14.7-1
- Update to 2.14.7
- Remove %%post and %%postun
- Adapt %%files to R-2.10.0
* Fri Sep 18 2009 pingou <pingou@pingoured.fr> 2.12.9-1
- Update to 2.12.9
* Sun Aug 23 2009 pingou <pingou@pingoured.fr> 2.12.8-1
- Update to 2.12.8
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 2.12.7-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Mon Jul 13 2009 pingou <pingou@pingoured.fr> 2.12.7-1
- Update to 2.12.7
* Fri Jun 12 2009 pingou <pingou@pingoured.fr> 2.12.6-1
- Update to 2.12.6
* Wed May 06 2009 pingou <pingou@pingoured.fr> 2.12.1-2
- Solve dependencies issue (Add R-Biobase as R and BR)
/
* Fri May 01 2009 pingou <pingou@pingoured.fr> 2.12.1-1
- Update to 2.12.1
* Tue Apr 28 2009 pingou <pingou@pingoured.fr> 2.12.0-1
- Update to Bioconductor 2.4 for R 2.9.0
* Fri Apr 03 2009 pingou <pingou@pingoured.fr> 2.11.47-1
- Update to the development version of bioconductor
* Wed Apr 01 2009 pingou <pingou -AT- pingoured.fr> 2.10.21-2
- Update URL to remove an unused macro
- Improve english in the comments
- Remove pkgconfig as BR of the -devel
* Fri Mar 13 2009 pingou <pingou -AT- pingoured.fr> 2.10.21-1
- initial package for Fedora