%global packname msm
Name: R-%{packname}
Version: 1.1.4
Release: 2%{?dist}
Source0: ftp://cran.r-project.org/pub/R/contrib/main/%{packname}_%{version}.tar.gz
License: GPLv2+
URL: http://cran.r-project.org/web/packages/msm/
Group: Applications/Engineering
Summary: Multi-state Markov and hidden Markov models in continuous time
BuildRequires: R-devel >= 3.0.0, tetex-latex, R-mvtnorm, R-survival
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
Requires: R-core >= 3.0.0, R-mvtnorm, R-survival
%description
Functions for fitting general continuous-time Markov and hidden Markov
multi-state models to longitudinal data. Both Markov transition rates
and the hidden Markov output process can be modelled in terms of
covariates. A variety of observation schemes are supported, including
processes observed at arbitrary times, completely-observed processes,
and censored states.
%prep
%setup -q -c -n %{packname}
# Fix some permissions and formats
# find . -type f -perm 755 -exec chmod 644 {} \;
find . -type f -name '*.[hc]' -exec chmod 644 {} \;
# Fix the encoding of the NEWS file
chmod 644 %{packname}/inst/NEWS
iconv -f ISO88591 -t UTF8 -o NEWS %{packname}/inst/NEWS
mv -f NEWS %{packname}/inst
%build
%install
rm -rf $RPM_BUILD_ROOT
# Specific installation procedure for R
mkdir -p $RPM_BUILD_ROOT%{_libdir}/R/library
%{_bindir}/R CMD INSTALL -l $RPM_BUILD_ROOT%{_libdir}/R/library %{packname}
# Remove the temporary object files
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
# Remove the generic cascading style sheet for R
rm -rf $RPM_BUILD_ROOT%{_libdir}/R/library/R.css
%check
# check needs mstate and diagram
# %{_bindir}/R CMD check %{packname}
%clean
rm -rf $RPM_BUILD_ROOT
%files
%defattr(-, root, root, -)
%dir %{_libdir}/R/library/%{packname}
%doc %{_libdir}/R/library/%{packname}/CITATION
%doc %{_libdir}/R/library/%{packname}/data
%doc %{_libdir}/R/library/%{packname}/doc
%doc %{_libdir}/R/library/%{packname}/html
%doc %{_libdir}/R/library/%{packname}/DESCRIPTION
%doc %{_libdir}/R/library/%{packname}/NEWS
%{_libdir}/R/library/%{packname}/INDEX
%{_libdir}/R/library/%{packname}/NAMESPACE
%{_libdir}/R/library/%{packname}/Meta
%{_libdir}/R/library/%{packname}/R
%{_libdir}/R/library/%{packname}/help
%{_libdir}/R/library/%{packname}/libs/%{packname}.so
%changelog
* Thu May 8 2014 Tom Callaway <spot@fedoraproject.org> - 1.1.4-2
- rebuild for R without libRblas/libRlapack
* Thu Apr 11 2013 Tom Callaway <spot@fedoraproject.org> - 1.1.4-1
- update to 1.1.4
* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Tue Nov 8 2011 Tom Callaway <spot@fedoraproject.org> - 1.1-1
- update to 1.1
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.9.5-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Thu Jan 21 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.9.5-2
- fix tag mistake
* Thu Jan 21 2010 Tom "spot" Callaway <tcallawa@redhat.com> - 0.9.5-1
- update to 0.9.5
- cleanup package to fix FTBFS
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.9.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Tue Jul 14 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.9.1-2
- Suppressed the unused definition of the packrel variable
* Fri Jun 12 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.9.1-1
- Integrated the new upstream (0.9.1) version
* Sat Jun 06 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.8.2-2
- Altered the license so as to reflect upstream, after clarification with them
* Sun May 03 2009 Denis Arnaud <denis.arnaud_fedora@m4x.org> 0.8.2-1
- Initial package creation