%define ENABLE_TESTS -DENABLE_TESTS:BOOL=ON
Name: avogadro
Version: 1.2.0
Release: 7%{?dist}
Summary: An advanced molecular editor for chemical purposes
License: GPLv2
URL: http://avogadro.openmolecules.net/
Source0: https://sourceforge.net/projects/avogadro/files/avogadro/1.2.0//%{name}-%{version}.tar.gz
Source1: avogadro.appdata.xml
## upstreamable patches
# Fix qmake mkspecs installation directory
Patch0: %{name}-1.1.1-mkspecs-dir.patch
# Remove -Wl,-s from the compiler flags, fixes -debuginfo (#700080)
Patch1: %{name}-1.1.1-no-strip.patch
# avogadro.pc missing eigen dependency
Patch2: %{name}-1.1.1-pkgconfig_eigen.patch
## upstreamable
# fix build with cmake-3.2+
# https://sourceforge.net/p/avogadro/bugs/746/
Patch10: %{name}-cmake-3.2.patch
# fix build with recent boost
Patch12: %{name}-1.1.1-Q_MOC_RUN.patch
# fix build (with recent swig/linker/python?)
Patch13: %{name}-1.1.1-python_openbabel.patch
# fix build with recent Qt
Patch14: %{name}-1.1.1-qt.patch
Patch15: %{name}-1.2.0-libmsymfloat.patch
BuildRequires: boost-devel >= 1.35
BuildRequires: cmake >= 2.6.0
BuildRequires: desktop-file-utils
BuildRequires: docbook-utils
BuildRequires: numpy, gcc-c++
BuildRequires: python2-devel
BuildRequires: pkgconfig(eigen2)
BuildRequires: pkgconfig(glew) >= 1.5.0
BuildRequires: pkgconfig(openbabel-2.0) >= 2.2.2
BuildRequires: pkgconfig(QtGui) pkgconfig(QtNetwork) pkgconfig(QtOpenGL)
BuildRequires: sip-devel
BuildRequires: libappstream-glib
%if 0%{?ENABLE_TESTS:1}
BuildRequires: dbus-x11 xorg-x11-server-Xvfb
%endif
Requires: %{name}-libs%{?_isa} = %{version}-%{release}
%description
An advanced molecular editor designed for
cross-platform use in computational chemistry,
molecular modeling, bioinformatics, materials science,
and related areas, which offers flexible rendering and
a powerful plugin architecture.
%package libs
Summary: Shared libraries for Avogadro
%{?_sip_api:Requires: sip-api(%{_sip_api_major}) >= %{_sip_api}}
%description libs
This package contains the shared libraries for the
molecular editor Avogadro.
%package devel
Summary: Development files for Avogadro
Requires: %{name}-libs%{?_isa} = %{version}-%{release}
%description devel
This package contains files to develop applications using
Avogadro libraries.
%package i18n
Summary: Language packs for Avogadro
BuildArch: noarch
Requires: %{name} = %{version}-%{release}
%description i18n
Language packs for Avogadro.
%prep
%setup -q
%patch0 -p1 -b .mkspecs-dir
%patch1 -p1 -b .no-strip
%patch2 -p1 -b .pkgconfig_eigen
%patch10 -p1 -b .cmake_x11
%patch12 -p1 -b .Q_MOC_RUN
%patch13 -p1 -b .python_openbabel
%patch14 -p1 -b .qt
%patch15 -p1 -b .libmsymfloat
## Remove spurious executable permissions
for i in `find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" -o -name "*.c" \)`; do
chmod a-x $i
done
%build
mkdir -p %{_target_platform}
pushd %{_target_platform}
export LDFLAGS="%{__global_ldflags} -lm -Wl,--as-needed"
export CXXFLAGS="%{optflags} -I../../libavogadro/src"
%{cmake} -DCMAKE_BUILD_TYPE:STRING=Release \
-Wno-dev \
%{?ENABLE_TESTS} \
-DENABLE_GLSL:BOOL=ON \
-DENABLE_PYTHON:BOOL=ON \
-DENABLE_RPATH:BOOL=OFF \
-DENABLE_VERSIONED_PLUGIN_DIR:BOOL=OFF \
-DINSTALL_LIB_DIR:PATH=%{_lib}/avogadro/extensions \
-DENABLE_THREADEDGL:BOOL=ON \
-DINSTALL_CMAKE_DIR:PATH=%{_lib}/libmsym/cmake ..
popd
make %{?_smp_mflags} -C %{_target_platform}
%install
make install/fast DESTDIR=%{buildroot} -C %{_target_platform}
# Install/check appdata file.
install -pm 644 -D %{SOURCE1} \
%{buildroot}%{_datadir}/appdata/avogadro.appdata.xml
appstream-util validate-relax --nonet %{buildroot}%{_datadir}/appdata/*.appdata.xml
#
%find_lang libavogadro --with-qt --without-mo
%find_lang avogadro --with-qt --without-mo
%check
# Version key is wrong and useless
desktop-file-edit --remove-key=Version %{buildroot}%{_datadir}/applications/avogadro.desktop
# Tests
%if 0%{?ENABLE_TESTS:1}
xvfb-run -a dbus-launch --exit-with-session make test ARGS="--output-on-failure" -C %{_target_platform} ||:
%endif
%post libs -p /sbin/ldconfig
%postun libs -p /sbin/ldconfig
%files -f avogadro.lang
%{_bindir}/avogadro
%{_bindir}/avopkg
%{_bindir}/qube
%dir %{_datadir}/avogadro
%{_datadir}/avogadro/builder/
%{_datadir}/avogadro/crystals/
%{_datadir}/avogadro/fragments/
%{_datadir}/pixmaps/avogadro-icon.png
%{_datadir}/applications/avogadro.desktop
%{_datadir}/appdata/avogadro.appdata.xml
%{_mandir}/man1/avogadro.1*
%{_mandir}/man1/avopkg.1*
%files devel
%{_includedir}/avogadro/
%{_includedir}/libmsym/
%{_libdir}/libavogadro.so
%{_libdir}/libavogadro_OpenQube.so
%{_libdir}/pkgconfig/avogadro.pc
%{_libdir}/avogadro/*.cmake
%{_libdir}/avogadro/cmake/
%{_libdir}/libmsym/cmake/
%{_qt4_prefix}/mkspecs/features/avogadro.prf
%files libs -f libavogadro.lang
%doc AUTHORS README
%license COPYING
%{python2_sitearch}/Avogadro.so
%{_datadir}/libavogadro/
%{_libdir}/libavogadro.so.1*
%{_libdir}/libavogadro_OpenQube.so.0*
%{_libdir}/avogadro/
%files i18n
%dir %{_datadir}/avogadro
%{_datadir}/avogadro/i18n/
%changelog
* Wed Jul 05 2017 Rex Dieter <rdieter@fedoraproject.org> - 1.2.0-7
- rebuild (sip)
* Tue Feb 07 2017 Kalev Lember <klember@redhat.com> - 1.2.0-6
- Rebuilt for Boost 1.63
* Tue Jan 10 2017 Orion Poplawski <orion@cora.nwra.com> - 1.2.0-5
- Rebuild for glew 2.0.0
* Sun Jan 01 2017 Rex Dieter <rdieter@math.unl.edu> - 1.2.0-4
- rebuild (sip)
* Thu Dec 22 2016 Sandro Mani <manisandro@gmail.com> - 1.2.0-3
- Build against eigen2 (upstream does not support eigen3 >= 3.3.0)
* Fri Oct 14 2016 Dominik Mierzejewski <rpm@greysector.net> - 1.2.0-2
- rebuild for openbabel-2.4.1
* Tue Sep 27 2016 Antonio Trande <sagitter@fedoraproject.org> - 1.2.0-1
- Update to 1.2.0 (bz#1347064) (bz#1347416)
- Make an i18n sub-package
- Patches updated
- Install an appdata file
* Tue Jul 19 2016 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1.1-19
- https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages
* Sat Feb 20 2016 Dominik Mierzejewski <rpm@greysector.net> - 1.1.1-18
- Rebuild for openbabel
- Fix build (gcc-6/Qt?)
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.1-17
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
* Thu Jan 14 2016 Adam Jackson <ajax@redhat.com> - 1.1.1-16
- Rebuild for glew 1.13
* Thu Aug 27 2015 Jonathan Wakely <jwakely@redhat.com> - 1.1.1-15
- Rebuilt for Boost 1.59
* Wed Jul 29 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1.1-14
- Rebuilt for https://fedoraproject.org/wiki/Changes/F23Boost159
* Wed Jul 22 2015 David Tardon <dtardon@redhat.com> - 1.1.1-13
- rebuild for Boost 1.58
* Wed Jun 17 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1.1-12
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
* Thu Apr 16 2015 Rex Dieter <rdieter@fedoraproject.org> 1.1.1-11
- rebuild (gcc5)
* Sun Mar 29 2015 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.1.1-10
- apply OpenMandriva patch to fix Eigen3 support
- build against Eigen3: change BuildRequires, pkgconfig_eigen patch
* Wed Mar 25 2015 Rex Dieter <rdieter@fedoraproject.org> 1.1.1-9
- rebuild (gcc5)
* Wed Feb 25 2015 Rex Dieter <rdieter@fedoraproject.org> 1.1.1-8
- rebuild (gcc5)
* Tue Jan 27 2015 Petr Machata <pmachata@redhat.com> - 1.1.1-7
- Rebuild for boost 1.57.0
* Mon Sep 22 2014 Rex Dieter <rdieter@fedoraproject.org> 1.1.1-6
- pull in upstream fix for qreal/arm issues
* Fri Aug 15 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
* Sat Jun 07 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.1.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
* Fri May 23 2014 Petr Machata <pmachata@redhat.com> - 1.1.1-3
- Rebuild for boost 1.55.0
* Sun Mar 16 2014 Rex Dieter <rdieter@fedoraproject.org> 1.1.1-2
- rebuild(sip)
* Sat Jan 25 2014 Rex Dieter <rdieter@fedoraproject.org> 1.1.1-1
- avogadro-1.1.1
- ExcludeArch: arm
* Mon Nov 18 2013 Dave Airlie <airlied@redhat.com> - 1.0.3-21
- rebuilt for GLEW 1.10
* Wed Oct 16 2013 Rex Dieter <rdieter@fedoraproject.org> 1.0.3-20
- rebuild (sip)
* Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.3-19
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Sat Jul 27 2013 pmachata@redhat.com - 1.0.3-18
- Rebuild for boost 1.54.0
* Mon Jun 17 2013 Rex Dieter <rdieter@fedoraproject.org> 1.0.3-17
- rebuild (sip)
* Mon Feb 11 2013 Rex Dieter <rdieter@fedoraproject.org> 1.0.3-16
- drop boost patch, qt/moc has workaround now
* Sun Feb 10 2013 Denis Arnaud <denis.arnaud_fedora@m4x.org> - 1.0.3-15
- Rebuild for Boost-1.53.0
* Sat Feb 09 2013 Denis Arnaud <denis.arnaud_fedora@m4x.org> - 1.0.3-14.1
- Rebuild for Boost-1.53.0
* Thu Dec 13 2012 Adam Jackson <ajax@redhat.com> - 1.0.3-13.1
- Rebuild for glew 1.9.0
* Mon Oct 01 2012 Rex Dieter <rdieter@fedoraproject.org> 1.0.3-12
- rebuild (sip)
* Thu Aug 09 2012 Rex Dieter <rdieter@fedoraproject.org> - 1.0.3-11
- rebuild (boost)
* Fri Jul 27 2012 Rex Dieter <rdieter@fedoraproject.org> - 1.0.3-10
- rebuild (glew)
- pkgconfig-style deps
* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.3-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
* Tue Feb 28 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.3-8
- Rebuilt for c++ ABI breakage
* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.3-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
* Fri Dec 23 2011 Rex Dieter <rdieter@fedoraproject.org> 1.0.3-6
- rebuild (sip/PyQt4)
* Tue Nov 22 2011 Peter Robinson <pbrobinson@fedoraproject.org> - 1.0.3-5
- Rebuild for boost 1.48
* Thu Jul 21 2011 Rex Dieter <rdieter@fedoraproject.org> 1.0.3-4
- rebuild (boost)
* Mon Jun 20 2011 ajax@redhat.com - 1.0.3-3
- Rebuild for new glew soname
* Wed Apr 27 2011 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.3-2
- remove -Wl,-s from the compiler flags, fixes -debuginfo (#700080)
* Tue Apr 26 2011 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.3-1
- update to 1.0.3
- drop all patches (fixed upstream)
- fix qmake mkspecs installation directory (broken in 1.0.3)
* Fri Apr 08 2011 Jaroslav Reznik <jreznik@redhat.com> - 1.0.1-15
- rebuild for new boost (1.46.1)
* Tue Mar 22 2011 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.1-14
- fix forcefield extension with OpenBabel 2.3.0 (#680292, upstream patch)
- fix autooptimization tool with OpenBabel 2.3.0 (#680292, patch by lg)
* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.0.1-13
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Mon Feb 07 2011 Thomas Spura <tomspur@fedoraproject.org> - 1.0.1-12
- rebuild for new boost
* Thu Nov 25 2010 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.1-11
- rebuild for new openbabel (2.3.0)
* Tue Nov 23 2010 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.1-10
- fix crash with current SIP and Python 2.7 (#642248)
* Wed Sep 29 2010 jkeating - 1.0.1-9
- Rebuilt for gcc bug 634757
* Tue Sep 14 2010 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.1-8
- fix FTBFS with SIP 4.11 (Gentoo#335644)
* Thu Sep 09 2010 Rex Dieter <rdieter@fedoraproject.org> - 1.0.1-7
- rebuild(sip)
* Sun Aug 22 2010 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.1-6
- -devel: Requires: glew-devel python-devel boost-devel
* Sun Aug 22 2010 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.1-5
- use CMAKE_SKIP_RPATH because we end up with rpaths otherwise
- disable tests because they don't work in Koji anyway
* Sun Aug 22 2010 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.1-4
- fix paths in AvogadroConfig.cmake
- fix packaging of translations
* Wed Aug 04 2010 Rahul Sundaram <sundaram@fedoraproject.org> - 1.0.1-3
- Rebuild for Boost soname bump
* Wed Jul 21 2010 David Malcolm <dmalcolm@redhat.com> - 1.0.1-2
- Rebuilt for https://fedoraproject.org/wiki/Features/Python_2.7/MassRebuild
* Mon May 24 2010 Rex Dieter <rdieter@fedoraproject.org> - 1.0.1-1
- avogadro-1.0.1
- -devel: move cmake-related files here
- -devel: Req: qt4-devel
- %%files: track lib sonames
- %%check section
* Wed Feb 10 2010 Kevin Kofler <Kevin@tigcc.ticalc.org> - 1.0.0-6
- reenable plugin builds and libs subpackage
- fix their build with sip 4.10
* Fri Jan 08 2010 Sebastian Dziallas <sebastian@when.com> - 1.0.0-5
- disable plugin builds and libs subpackage
* Thu Jan 07 2010 Rex Dieter <rdieter@fedoraproject.org> - 1.0.0-4
- rebuild (sip)
* Mon Nov 23 2009 Rex Dieter <rdieter@fedoraproject.org> - 1.0.0-3
- rebuild (for qt-4.6.0-rc1, f13+)
* Mon Nov 16 2009 Rex Dieter <rdieter@fedoraproject.org> - 1.0.0-2
- -libs: Requires: sip-api(%%_sip_api_major) >= %%_sip_api (#538124)
- Requires: %%{name}-libs ...
* Thu Oct 29 2009 Sebastian Dziallas <sebastian@when.com> 1.0.0-1
- update to new upstream release
* Tue Oct 20 2009 Rex Dieter <rdieter@fedoraproject.org> 0.9.8-3
- rebuild (eigen2)
* Sat Sep 26 2009 Sebastian Dziallas <sebastian@when.com> 0.9.8-2
- fix typo in file list
* Sat Sep 26 2009 Sebastian Dziallas <sebastian@when.com> 0.9.8-1
- update to new upstream release
- enable python and glsl support again
* Fri Jul 24 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.9.6-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
* Sat Jun 06 2009 Sebastian Dziallas <sebastian@when.com> 0.9.6-1
- new upstream release to fix issue with qt 4.5.0 and earlier
* Wed Jun 03 2009 Sebastian Dziallas <sebastian@when.com> 0.9.5-3
- remove remaining python parts
- fix files section finally
* Wed Jun 03 2009 Sebastian Dziallas <sebastian@when.com> 0.9.5-2
- disable python and glsl for now
- fix files section
* Wed Jun 03 2009 Sebastian Dziallas <sebastian@when.com> 0.9.5-1
- update to new release
* Tue May 12 2009 Sebastian Dziallas <sebastian@when.com> 0.9.4-1
- update to new release
* Fri Apr 10 2009 Sebastian Dziallas <sebastian@when.com> 0.9.3-1
- update to new release
* Sat Mar 21 2009 Sebastian Dziallas <sebastian@when.com> 0.9.2-2
- get desktop file properly installed
* Sat Mar 14 2009 Sebastian Dziallas <sebastian@when.com> 0.9.2-1
- update to new release
* Wed Feb 25 2009 Sebastian Dziallas <sebastian@when.com> 0.9.1-1
- update to new release
* Mon Feb 23 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.9.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
* Thu Jan 22 2009 Sebastian Dziallas <sebastian@when.com> 0.9.0-1
- update to new release
* Sun Sep 14 2008 Sebastian Dziallas <sebastian@when.com> 0.8.1-6
- add handbook to docs
* Sun Sep 14 2008 Sebastian Dziallas <sebastian@when.com> 0.8.1-5
- add build requirements and fix group names
* Wed Aug 13 2008 Sebastian Dziallas <sebastian@when.com> 0.8.1-4
- fix typos
* Sat Aug 9 2008 Sebastian Dziallas <sebastian@when.com> 0.8.1-3
- reorganize spec file
* Sat Aug 9 2008 Sebastian Dziallas <sebastian@when.com> 0.8.1-2
- rename shared library package and structure spec file
* Sun Aug 3 2008 Sebastian Dziallas <sebastian@when.com> 0.8.1-1
- initial pacakging release based on PackMan release