Name: bwa
Version: 0.6.1
Release: 2%{?dist}
Summary: Burrows-Wheeler Alignment tool
Group: Applications/Engineering
License: GPLv3
URL: http://bio-bwa.sourceforge.net/
Source0: http://downloads.sourceforge.net/bio-%{name}/%{name}-%{version}.tar.bz2
Patch0: bwa-nosse2-i386.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
BuildRequires: zlib-devel
%description
BWA is a program for aligning sequencing reads against a large
reference genome (e.g. human genome). It has two major components, one
for read shorter than 150bp and the other for longer reads.
%prep
#Avoid SSE2 on i386
%ifarch i386
%patch0 -p1 -b .bwa-nosse2-i386.patch
%endif
%setup -q
%build
make %{?_smp_mflags} CFLAGS="%{optflags}"
%install
rm -rf %{buildroot}
mkdir -p %{buildroot}/%{_bindir}
mkdir -p %{buildroot}/%{_mandir}/man1
install -m 0755 bwa %{buildroot}/%{_bindir}
install -m 0755 solid2fastq.pl %{buildroot}/%{_bindir}
install -m 0755 qualfa2fq.pl %{buildroot}/%{_bindir}
install -m 0644 bwa.1 %{buildroot}/%{_mandir}/man1/bwa.1
%clean
rm -rf %{buildroot}
%files
%defattr(-,root,root,-)
%doc COPYING NEWS
%{_mandir}/man1/%{name}.1*
%{_bindir}/bwa
%{_bindir}/qualfa2fq.pl
%{_bindir}/solid2fastq.pl
%changelog
* Sun May 13 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.6.1-2
- add patch to avoid SSE2 on i386
* Wed Jan 11 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.6.1-1
- update to 0.6.1
* Thu Feb 17 2011 Adam Huffman <bloch@verdurin.com> - 0.5.9-1
- new upstream release 0.5.9
* Tue Feb 08 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org>
- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
* Wed Jan 5 2011 Adam Huffman <bloch@verdurin.com> - 0.5.8c-1
- upstream bugfix release
* Tue Jul 20 2010 Adam Huffman <bloch@verdurin.com> - 0.5.8a-1
- new upstream release
* Sat May 29 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-2
- fix source URL
- install manpage
- fix cflags
* Fri May 28 2010 Adam Huffman <bloch@verdurin.com> - 0.5.7-1
- initial version