%global __cmake_in_source_build 1
Name: dolfin
Version: 2019.1.0.post0
%global fenics_version 2019.1
Release: 17%{?dist}
Summary: FEniCS computational backend and problem solving environment
License: LGPLv3+
URL: https://fenicsproject.org/
Source0: https://bitbucket.org/fenics-project/dolfin/downloads/dolfin-%{version}.tar.gz
Source1: https://bitbucket.org/fenics-project/dolfin/downloads/dolfin-%{version}.tar.gz.asc
Source2: 3083BE4C722232E28AD0828CBED06106DD22BAB3.gpg
%if 0%{?fedora} >= 33
%global blaslib flexiblas
%else
%global blaslib openblas
%endif
BuildRequires: gcc-c++
BuildRequires: gnupg2
BuildRequires: cmake
BuildRequires: boost-devel
BuildRequires: eigen3-devel
BuildRequires: petsc-devel
BuildRequires: sundials-devel
BuildRequires: scotch-devel
# ptscotch-mpich-devel?
BuildRequires: %{blaslib}-devel
BuildRequires: hdf5-devel
# hdf5-mpich-devel?
BuildRequires: zlib-devel
BuildRequires: python3-devel
BuildRequires: python3-setuptools
BuildRequires: pybind11-devel
BuildRequires: python3dist(numpy)
BuildRequires: python3dist(fenics-ffc) >= %{fenics_version}
BuildRequires: python3dist(fenics-ufl) >= %{fenics_version}
BuildRequires: python3dist(fenics-dijitso) >= %{fenics_version}
# go cmake go
BuildRequires: chrpath
BuildRequires: make
# check-buildroot flags the python .so, but it should be fine after rpath removal.
# It seems that the original path to the library is stored in some comment.
%global __arch_install_post /usr/lib/rpm/check-buildroot || :
#BuildRequires: mpich-devel
#BuildRequires: openmpi-devel
%global _description %{expand:
DOLFIN is the computational backend of FEniCS and implements the
FEniCS Problem Solving Environment.}
%description %_description
%package devel
Summary: Development files for %{name}
Requires: %{name} = %{version}-%{release}%{?isa}
%description devel
%{summary}.
%package -n python3-dolfin
Summary: Python wrapper for the FEniCS dolfin environment
# The jit compiles and links to the dolfin library
Requires: %{name}-devel = %{version}-%{release}%{?isa}
%{?python_provide:%python_provide python3-dolfin}
%description -n python3-dolfin %_description
%package doc
Summary: Documentation and demos for %{name}
BuildArch: noarch
%description doc
%{summary}.
%prep
%{?gpgverify:%{gpgverify} --keyring='%{SOURCE2}' --signature='%{SOURCE1}' --data='%{SOURCE0}'}
%autosetup -n dolfin-%{version}
# Let's just specify an exact version of a dependency, yay!
sed -i -r 's|pybind11==|pybind11>=|' python/setup.py
cat >>python/CMakeLists.txt <<EOF
set(CMAKE_CXX_FLAGS "\${CMAKE_CXX_FLAGS} -I$PWD")
EOF
# https://bugzilla.redhat.com/show_bug.cgi?id=1843103
sed -r -i 's/#include </#include <algorithm>\n\0/' \
dolfin/geometry/IntersectionConstruction.cpp \
dolfin/mesh/MeshFunction.h
sed -r -i 's|boost/detail/endian.hpp|boost/endian/arithmetic.hpp|' \
dolfin/io/VTKFile.cpp \
dolfin/io/VTKWriter.cpp
%build
# %%_mpich_load
mkdir -p build && cd build
CFLAGS=-Wno-unused-variable %cmake .. \
-DBLAS_LIBRARIES=-l%{blaslib} \
-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=off
%make_build
# "temporary install" so the python build can find the stuff it needs
%make_install
cd ../python
VERBOSE=1 CMAKE_PREFIX_PATH=%{buildroot}/usr/share/dolfin/cmake CMAKE_SKIP_INSTALL_RPATH=yes CMAKE_SKIP_RPATH=yes %py3_build
%install
cd build
%make_install
cd ../python
VERBOSE=1 CMAKE_PREFIX_PATH=%{buildroot}/usr/share/dolfin/cmake CMAKE_SKIP_INSTALL_RPATH=yes CMAKE_SKIP_RPATH=yes %py3_install
sed -r -i '1 {s|#!/usr/bin/env python.*|#!%{__python3}|}' \
%{buildroot}/usr/bin/dolfin-order \
%{buildroot}/usr/bin/dolfin-plot \
%{buildroot}/usr/bin/dolfin-convert
# this file is just pointless
rm %{buildroot}/usr/share/dolfin/dolfin.conf
# there's even an option for this, except it seems to have no effect
chrpath %{buildroot}%{python3_sitearch}/dolfin/*.so
chrpath --delete %{buildroot}%{python3_sitearch}/dolfin/*.so
%check
ctest -V %{?_smp_mflags}
%files
%license COPYING COPYING.LESSER AUTHORS
%doc README.rst
/usr/bin/dolfin-version
/usr/bin/fenics-version
%{_libdir}/libdolfin.so.%{fenics_version}
%{_libdir}/libdolfin.so.%{fenics_version}.*
%dir /usr/share/dolfin
%dir /usr/share/dolfin/data
/usr/share/dolfin/data/README
%files devel
/usr/include/dolfin.h
/usr/include/dolfin/
%{_libdir}/libdolfin.so
%{_libdir}/pkgconfig/dolfin.pc
/usr/share/dolfin/cmake/
%files doc
/usr/bin/dolfin-get-demos
/usr/share/dolfin/demo/
%files -n python3-dolfin
/usr/bin/dolfin-convert
/usr/bin/dolfin-order
/usr/bin/dolfin-plot
%{python3_sitearch}/dolfin/
%{python3_sitearch}/dolfin_utils/
%{python3_sitearch}/fenics/
%{python3_sitearch}/fenics_dolfin-%{fenics_version}*-py%{python3_version}.egg-info/
%changelog
* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 2019.1.0.post0-17
- Rebuilt for Python 3.10
* Wed May 05 2021 Mamoru TASAKA <mtasaka@fedoraproject.org> - 2019.1.0.post0-16
- Rebuild (petsc)
* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2019.1.0.post0-15
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Fri Jan 22 2021 Jonathan Wakely <jwakely@redhat.com> - 2019.1.0.post0-14
- Rebuilt for Boost 1.75
* Wed Jan 06 2021 Orion Poplawski <orion@nwra.com> - 2019.1.0.post0-13
- Rebuild for sundials 5.6.1
* Sun Nov 22 2020 Orion Poplawski <orion@nwra.com> - 2019.1.0.post0-12
- Rebuild for sundials 5.5.0/petsc 3.14
* Mon Oct 5 07:22:07 CEST 2020 Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2019.1.0.post0-11
- Rebuilt for sundials 5.4.0
* Thu Aug 27 2020 Iñaki Úcar <iucar@fedoraproject.org> - 2019.1.0.post0-10
- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager
* Tue Aug 04 2020 Gwyn Ciesla <gwync@protonmail.com> - 2019.1.0.post0-9
- Fix FTBFS.
* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2019.1.0.post0-8
- Second attempt - Rebuilt for
https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2019.1.0.post0-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Thu Jun 25 2020 Orion Poplawski <orion@cora.nwra.com> - 2019.1.0.post0-6
- Rebuild for hdf5 1.10.6
* Tue Jun 23 2020 Gwyn Ciesla <gwync@protonmail.com> - 2019.1.0.post0-5
- Directly BR python3-setuptools.
* Wed Jun 3 2020 Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2019.1.0.post0-4
- Rebuilt for new boost (#1843103)
* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 2019.1.0.post0-3
- Rebuilt for Python 3.9
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2019.1.0.post0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
* Wed Oct 9 2019 Zbigniew Jędrzejewski-Szmek <zbyszek@in.waw.pl> - 2019.1.0-1
- Initial packaging