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<?xml version="1.0" encoding="UTF-8"?>
<component type="desktop-application">
  <id>org.jmol.jmol</id>
  <metadata_license>0BSD</metadata_license>
  <project_license>LGPL-2.1-or-later</project_license>
  <name>Jmol</name>
  <summary>Java viewer for chemical structures in 3D</summary>
  <description>
    <p>
      Jmol is a free, open source molecule viewer for students, educators, and
      researchers in chemistry and biochemistry.
    </p>
  </description>
  <launchable type="desktop-id">org.jmol.jmol.desktop</launchable>
  <screenshots>
    <screenshot type="default">
      <image>http://jmol.sourceforge.net/screenshots/aceticacid.jpg</image>
      <caption>Acetic acid using CPK colors and spacefilled atoms</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/measurements-1.png</image>
      <caption>A shaded rendering of caffeine, with some measurements shown (distance, angle, dihedral)</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/screenshot5.jpg</image>
      <caption>Display of bounding boxes and axes of coordinate space</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/Picture_2.png</image>
      <caption>The electrostatic potential of allene mapped onto a translucent surface</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/water_pmesh.png</image>
      <caption>Two translucent planes (pMesh) illustrating symmetry planes for water molecule</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/bbdots.jpg</image>
      <caption>A few residues with backbone in blue and vdw dots surface</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/hemes.jpg</image>
      <caption>Hemoglobin with backbone trace colored by chain and spacefilled hemes</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/2hvy.jpg</image>
      <caption>Crystal structure of an H/ACA box RNP from Pyrococcus furiosus (PDB CODE: 2HVY)</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/screenshot_streptavidin.png</image>
      <caption>Biotin (cpk color, spacefilled) inside its binding pocket in a streptavidin subunit</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/screenshot_zincfinger.png</image>
      <caption>Fragment of transcription factor TFIIA forming 3 consecutive zinc finger motifs</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/screenshot_hemoglobin.png</image>
      <caption>Highlighting 2 salt bridges in hemoglobin tetramer</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/Thermus_ribosome_1jgo_and_1giy.jpg</image>
      <caption>Eubacterial 70S Ribosome from Thermus thermophilus (PDB CODES: 1jgo and 1giy)</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/screenshot_newtranslucency.jpg</image>
      <caption>Illustrates variable translucency, introduced in Jmol 11.2</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/crystal-1.png</image>
      <caption>Display of quartz crystal structure, filling 2x2x2 unit cells</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/zeolite-rho.jpg</image>
      <caption>Network of aluminate-silicate tetrahedra and the volume available for absorption</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/Picture_3.png</image>
      <caption>The 4f-orbitals</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/Picture_4.png</image>
      <caption>Cartoon p-orbitals of benzene together with the corresponding translucent molecular orbital</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/sn2-distance-anim.gif</image>
      <caption>An S<sub>N</sub>2 reaction animation showing distance between the chlorine and carbon atoms</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/vibrate.jpg</image>
      <caption>Vibration animation of benzene with vectors shown and list of vibration frequencies</caption>
    </screenshot>
    <screenshot>
      <image>http://jmol.sourceforge.net/screenshots/screenshot_pertable.png</image>
      <caption>Periodic table showing atomic, van der Waals and ionic radii</caption>
    </screenshot>
  </screenshots>
  <update_contact>loganjerry@gmail.com</update_contact>
  <url type="homepage">http://www.jmol.org/</url>
  <url type="bugtracker">https://sourceforge.net/p/jmol/bugs/</url>
  <url type="faq">http://jmol.sourceforge.net/faqs/</url>
  <url type="help">http://jmol.sourceforge.net/docs/</url>
  <content_rating type="oars-1.1"></content_rating>
  <provides>
    <binary>jmol</binary>
  </provides>
</component>