diff -Nrup a/src/multial.c b/src/multial.c
--- a/src/multial.c	2019-10-15 14:47:08.051155889 -0600
+++ b/src/multial.c	2019-11-11 08:14:15.681736772 -0700
@@ -68,7 +68,7 @@ inline int isGap(align* ali, int seqn, i
   return i;
 }
 
-inline int scoreLocal(int which, align* ali, int loc) {
+static inline int scoreLocal(int which, align* ali, int loc) {
   int i, lets = 0;
   for (i=0; i < 4; i++)
     lets += ali->cnts[i][loc];
@@ -546,7 +546,7 @@ inline int v (int y){
   return 0;
 }
 
-inline int matchscore (align*a, int ai, align *b, int bi){
+static inline int matchscore (align*a, int ai, align *b, int bi){
   
   return
     matchcache[v(a->cnts[0][ai] + b->cnts[0][bi]) | 
@@ -582,7 +582,7 @@ inline int endGap2 (align* a, int ai, al
 		  (v(a->numseq + b->numseq - (b->cnts[CNTS_CB][bi]+a->cnts[CNTS_CB][ai])) << 18)];
 }
 
-inline int contGap(align* ali, int myw, align* other, int ow, int *sopp) {
+static inline int contGap(align* ali, int myw, align* other, int ow, int *sopp) {
   return gapcache[(v(other->cnts[CNTS_GS][ow])) |
 		  (v(ali->numseq + other->cnts[CNTS_GC][ow]) << 6) |
 		  (v(other->cnts[CNTS_GE][ow]) << 12) |
@@ -590,7 +590,7 @@ inline int contGap(align* ali, int myw,
     sopp[ow];
 }
 
-inline int openGap(align* ali, int w, align* other, int ow, int *sopp, char *desc) {
+static inline int openGap(align* ali, int w, align* other, int ow, int *sopp, char *desc) {
   int alopen, pen, sav, i;
 
   alopen = ali->cnts[CNTS_GC][w] + ali->cnts[CNTS_GE][w];
diff -Nrup a/src/order.c b/src/order.c
--- a/src/order.c	2019-10-15 14:47:08.053155877 -0600
+++ b/src/order.c	2019-10-15 14:47:46.579937474 -0600
@@ -458,7 +458,7 @@ inline int ismatch(char a, char b) {
   return a == b;
 }
 
-inline int matchscore (unsigned char a, unsigned char b) {
+static inline int matchscore (unsigned char a, unsigned char b) {
   return substmatrix[a][b];
   /*
     
diff -Nrup a/src/utils/scorecontigs.c b/src/utils/scorecontigs.c
--- a/src/utils/scorecontigs.c	2019-12-17 19:53:14.817032466 -0700
+++ b/src/utils/scorecontigs.c	2019-12-17 19:53:01.811068822 -0700
@@ -259,7 +259,7 @@ inline int allzeroes (rangelist **ranges
   return 1;
 }
 
-inline void print (int start, int end, int *score, int numContigs){
+static inline void print (int start, int end, int *score, int numContigs){
   int j;
 
   printf ("(%7d %7d)", start, end);