diff -rupN Python-2.7.13/Lib/distutils/command/build_ext.py Python-2.7.13-new/Lib/distutils/command/build_ext.py
--- Python-2.7.13/Lib/distutils/command/build_ext.py	2017-01-21 01:46:08.289588519 +0100
+++ Python-2.7.13-new/Lib/distutils/command/build_ext.py	2017-01-21 01:46:11.183557621 +0100
@@ -227,9 +227,10 @@ class build_ext (Command):
         if sys.platform[:6] == 'cygwin' or sys.platform[:6] == 'atheos':
             if sys.executable.startswith(os.path.join(sys.exec_prefix, "bin")):
                 # building third party extensions
+                config_dir_name = os.path.basename(sysconfig.get_config_var('LIBPL'))
                 self.library_dirs.append(os.path.join(sys.prefix, "lib",
                                                       "python" + get_python_version(),
-                                                      "config"))
+                                                      config_dir_name))
             else:
                 # building python standard extensions
                 self.library_dirs.append('.')
diff -rupN Python-2.7.13/Lib/sysconfig.py Python-2.7.13-new/Lib/sysconfig.py
--- Python-2.7.13/Lib/sysconfig.py	2017-01-21 01:46:11.182557632 +0100
+++ Python-2.7.13-new/Lib/sysconfig.py	2017-01-21 01:46:11.184557610 +0100
@@ -27,13 +27,13 @@ _INSTALL_SCHEMES = {
         'data'   : '{base}',
         },
     'nt': {
-        'stdlib': '{base}/Lib',
-        'platstdlib': '{base}/Lib',
-        'purelib': '{base}/Lib/site-packages',
-        'platlib': '{base}/Lib/site-packages',
-        'include': '{base}/Include',
-        'platinclude': '{base}/Include',
-        'scripts': '{base}/Scripts',
+        'stdlib': '{base}/lib/python{py_version_short}',
+        'platstdlib': '{base}/lib/python{py_version_short}',
+        'purelib': '{base}/lib/python{py_version_short}',
+        'platlib': '{base}/lib/python{py_version_short}',
+        'include': '{base}/include/python{py_version_short}',
+        'platinclude': '{base}/include/python{py_version_short}',
+        'scripts': '{base}/bin',
         'data'   : '{base}',
         },
     'os2': {
@@ -56,12 +56,12 @@ _INSTALL_SCHEMES = {
         'data'   : '{userbase}',
         },
     'nt_user': {
-        'stdlib': '{userbase}/Python{py_version_nodot}',
-        'platstdlib': '{userbase}/Python{py_version_nodot}',
-        'purelib': '{userbase}/Python{py_version_nodot}/site-packages',
-        'platlib': '{userbase}/Python{py_version_nodot}/site-packages',
-        'include': '{userbase}/Python{py_version_nodot}/Include',
-        'scripts': '{userbase}/Scripts',
+        'stdlib': '{userbase}/lib/python{py_version_short}',
+        'platstdlib': '{userbase}/lib/python{py_version_short}',
+        'purelib': '{userbase}/lib/python{py_version_short}',
+        'platlib': '{userbase}/lib/python{py_version_short}',
+        'include': '{userbase}/include/python{py_version_short}',
+        'scripts': '{userbase}/bin',
         'data'   : '{userbase}',
         },
     'posix_user': {
@@ -390,7 +390,7 @@ def _init_non_posix(vars):
     vars['INCLUDEPY'] = get_path('include')
     vars['SO'] = '.pyd'
     vars['EXE'] = '.exe'
-    vars['VERSION'] = _PY_VERSION_SHORT_NO_DOT
+    vars['VERSION'] = _PY_VERSION_SHORT
     vars['BINDIR'] = os.path.dirname(_safe_realpath(sys.executable))
 
 #