Put the certificates to the /etc/pki as suggested by:
http://fedoraproject.org/wiki/PackagingDrafts/Certificates

diff -ru openvas-manager-5.0.1/CMakeLists.txt openvas-manager-5.0.1.pki/CMakeLists.txt
--- openvas-manager-5.0.1/CMakeLists.txt	2014-05-09 15:28:54.000000000 +0200
+++ openvas-manager-5.0.1.pki/CMakeLists.txt	2014-05-26 23:03:26.804186844 +0200
@@ -168,12 +168,13 @@
 set (OPENVAS_CERT_RES_DIR "${OPENVAS_DATA_DIR}/cert")
 set (OPENVAS_CERT_DATA_DIR "${OPENVAS_STATE_DIR}/cert-data")
 set (OPENVAS_CA_DIR        "${OPENVAS_STATE_DIR}/openvasmd/trusted_certs")
+set (OPENVAS_CERT_DIR     "${SYSCONFDIR}/pki/openvas")
 
-set (OPENVAS_SCANNER_CERTIFICATE "${OPENVAS_STATE_DIR}/CA/servercert.pem")
-set (OPENVAS_SCANNER_KEY         "${OPENVAS_STATE_DIR}/private/CA/serverkey.pem")
-set (OPENVAS_CLIENT_CERTIFICATE  "${OPENVAS_STATE_DIR}/CA/clientcert.pem")
-set (OPENVAS_CLIENT_KEY          "${OPENVAS_STATE_DIR}/private/CA/clientkey.pem")
-set (OPENVAS_CA_CERTIFICATE      "${OPENVAS_STATE_DIR}/CA/cacert.pem")
+set (OPENVAS_SCANNER_CERTIFICATE "${OPENVAS_CERT_DIR}/CA/servercert.pem")
+set (OPENVAS_SCANNER_KEY         "${OPENVAS_CERT_DIR}/private/CA/serverkey.pem")
+set (OPENVAS_CLIENT_CERTIFICATE  "${OPENVAS_CERT_DIR}/CA/clientcert.pem")
+set (OPENVAS_CLIENT_KEY          "${OPENVAS_CERT_DIR}/private/CA/clientkey.pem")
+set (OPENVAS_CA_CERTIFICATE      "${OPENVAS_CERT_DIR}/CA/cacert.pem")
 
 set (OPENVAS_NVT_DIR             "${OPENVAS_STATE_DIR}/plugins/")