# XXX: note for maintainers
# Do NOT update HDMF without checking if packages that depend on it, for
# example python-pynwb can be installed with the new version

%bcond tests 1

# Not yet packaged: https://pypi.org/project/linkml-runtime/
%bcond linkml 0

%global desc %{expand:
The Hierarchical Data Modeling Framework The Hierarchical Data Modeling
Framework, or *HDMF* is a Python package for working with hierarchical data. It
provides APIs for specifying data models, reading and writing data to different
storage backends, and representing data with Python object.Documentation of
HDMF can be found at Release. Documentation of HDMF can be found at 
https://hdmf.readthedocs.io}

# We have unbundled hdmf-common-schema. It’s possible that some version skew
# could be tolerated here, but it’s best if the unbundled version can match the
# version that was bundled in the current python-hdmf release. That version
# number can be read from
# src/hdmf/common/hdmf-common-schema/common/namespace.yaml, in
# ['namespaces'][0]['version'].
%global schema_version 1.7.0

Name:           python-hdmf
Version:        3.7.0
Release:        %autorelease
Summary:        A package for standardizing hierarchical object data

License:        BSD-3-Clause-LBNL
URL:            https://github.com/hdmf-dev/hdmf
Source0:        %{url}/releases/download/%{version}/hdmf-%{version}.tar.gz
# Man page hand-written for Fedora in groff_man(7) format based on help output
Source1:        validate_hdmf_spec.1

# Downstream-only: Patch out coverage from pytest invocation
# https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_linters
Patch:          0001-Patch-out-coverage-from-pytest-invocation.patch

# Fix GenericDataChunkIteratorTests.test_abstract_assertions for Python 3.12
# https://github.com/hdmf-dev/hdmf/pull/903
Patch:          %{url}/pull/903.patch

BuildArch:      noarch

BuildRequires:  python3-devel
%if %{with tests}
BuildRequires:  python3dist(pytest)
# Enables an optional integration test with this library:
BuildRequires:  python3dist(tqdm)
%endif

%description %{desc}

%package -n python3-hdmf
Summary:        %{summary}

# Unbundled
%global schema_epoch 1
BuildRequires:  hdmf-common-schema = %{schema_epoch}:%{schema_version}
Requires:       hdmf-common-schema = %{schema_epoch}:%{schema_version}

%description -n python3-hdmf %{desc}

%pyproject_extras_subpkg -n python3-hdmf zarr tqdm %{?with_linkml:linkml}

# https://docs.fedoraproject.org/en-US/packaging-guidelines/Directory_Replacement/#_scriptlet_to_replace_a_directory
%pretrans -p <lua> -n python3-hdmf
path = "%{python3_sitelib}/hdmf/common/hdmf-common-schema"
st = posix.stat(path)
if st and st.type == "directory" then
  status = os.rename(path, path .. ".rpmmoved")
  if not status then
    suffix = 0
    while not status do
      suffix = suffix + 1
      status = os.rename(path .. ".rpmmoved", path .. ".rpmmoved." .. suffix)
    end
    os.rename(path, path .. ".rpmmoved")
  end
end

%prep
%autosetup -n hdmf-%{version} -p1
rm -vrf src/hdmf/common/hdmf-common-schema/

%generate_buildrequires
%pyproject_buildrequires -x zarr,tqdm%{?with_linkml:,linkml}

%build
%pyproject_wheel

%install
%pyproject_install
%pyproject_save_files hdmf

ln -s %{_datadir}/hdmf-common-schema/ \
    %{buildroot}%{python3_sitelib}/hdmf/common/hdmf-common-schema

install -t '%{buildroot}%{_mandir}/man1' -D -p -m 0644 '%{SOURCE1}'

%check
%if %{with tests}
%pytest
%endif

%files -n python3-hdmf -f %{pyproject_files}
%license license.txt
%doc README.rst Legal.txt

%{_bindir}/validate_hdmf_spec
%{_mandir}/man1/validate_hdmf_spec.1*

# symbolic link
%{python3_sitelib}/hdmf/common/hdmf-common-schema

# https://docs.fedoraproject.org/en-US/packaging-guidelines/Directory_Replacement/#_scriptlet_to_replace_a_directory
%ghost %{python3_sitelib}/hdmf/common/hdmf-common-schema.rpmmoved

%changelog
%autochangelog